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Items: 1 to 20 of 264


BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.

Rueda M, Orozco M, Totrov M, Abagyan R.

BMC Struct Biol. 2013 Dec 13;13:32. doi: 10.1186/1472-6807-13-32.


SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.

Rueda M, Katritch V, Raush E, Abagyan R.

Bioinformatics. 2010 Nov 1;26(21):2784-5. doi: 10.1093/bioinformatics/btq504. Epub 2010 Sep 24.


pKNOT: the protein KNOT web server.

Lai YL, Yen SC, Yu SH, Hwang JK.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W420-4. Epub 2007 May 25.


WEBnm@: a web application for normal mode analyses of proteins.

Hollup SM, Salensminde G, Reuter N.

BMC Bioinformatics. 2005 Mar 11;6:52.


PepBuild: a web server for building structure data of peptides/proteins.

Singh B.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W559-61.


AISMIG--an interactive server-side molecule image generator.

Bohne-Lang A, Groch WD, Ranzinger R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W705-9.


Protein knot server: detection of knots in protein structures.

Kolesov G, Virnau P, Kardar M, Mirny LA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W425-8. Epub 2007 May 21.


COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures.

Vertrees J, Barritt P, Whitten S, Hilser VJ.

Bioinformatics. 2005 Aug 1;21(15):3318-9. Epub 2005 May 27.


SuperPose: a simple server for sophisticated structural superposition.

Maiti R, Van Domselaar GH, Zhang H, Wishart DS.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W590-4.


BSDD: Biomolecules Segment Display Device--a web-based interactive display tool.

Selvarani P, Shanthi V, Rajesh CK, Saravanan S, Sekar K.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W645-8.


VistaClara: an expression browser plug-in for Cytoscape.

Kincaid R, Kuchinsky A, Creech M.

Bioinformatics. 2008 Sep 15;24(18):2112-4. doi: 10.1093/bioinformatics/btn368. Epub 2008 Aug 4.


3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.

Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W416-9. Epub 2007 May 8.


RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

Quinn GB, Bi C, Christie CH, Pang K, Prlić A, Nakane T, Zardecki C, Voigt M, Berman HM, Bourne PE, Rose PW.

Bioinformatics. 2015 Jan 1;31(1):126-7. doi: 10.1093/bioinformatics/btu596. Epub 2014 Sep 2.


STING Millennium: A web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence.

Neshich G, Togawa RC, Mancini AL, Kuser PR, Yamagishi ME, Pappas G Jr, Torres WV, Fonseca e Campos T, Ferreira LL, Luna FM, Oliveira AG, Miura RT, Inoue MK, Horita LG, de Souza DF, Dominiquini F, Alvaro A, Lima CS, Ogawa FO, Gomes GB, Palandrani JF, dos Santos GF, de Freitas EM, Mattiuz AR, Costa IC, de Almeida CL, Souza S, Baudet C, Higa RH.

Nucleic Acids Res. 2003 Jul 1;31(13):3386-92.


MolLoc: a web tool for the local structural alignment of molecular surfaces.

Angaran S, Bock ME, Garutti C, Guerra C.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W565-70. doi: 10.1093/nar/gkp405. Epub 2009 May 22.


The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.

Moreland JL, Gramada A, Buzko OV, Zhang Q, Bourne PE.

BMC Bioinformatics. 2005 Feb 6;6:21.


eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

Kinoshita K, Murakami Y, Nakamura H.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W398-402. Epub 2007 Jun 12.


SymD webserver: a platform for detecting internally symmetric protein structures.

Tai CH, Paul R, Dukka KC, Shilling JD, Lee B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W296-300. doi: 10.1093/nar/gku364. Epub 2014 May 5.


DescFold: a web server for protein fold recognition.

Yan RX, Si JN, Wang C, Zhang Z.

BMC Bioinformatics. 2009 Dec 14;10:416. doi: 10.1186/1471-2105-10-416.


iMolTalk: an interactive, internet-based protein structure analysis server.

Diemand AV, Scheib H.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W512-6.

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