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Results: 1 to 20 of 98

1.

Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying.

Kiefer RC, Freimuth RR, Chute CG, Pathak J.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:118-22. eCollection 2013.

PMID:
24303249
[PubMed]
Free PMC Article
2.

Validation and discovery of genotype-phenotype associations in chronic diseases using linked data.

Pathak J, Kiefer R, Freimuth R, Chute C.

Stud Health Technol Inform. 2012;180:549-53.

PMID:
22874251
[PubMed - indexed for MEDLINE]
3.

Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank.

Pathak J, Kiefer RC, Bielinski SJ, Chute CG.

J Biomed Semantics. 2012 Dec 17;3(1):10. doi: 10.1186/2041-1480-3-10.

PMID:
23244446
[PubMed]
Free PMC Article
4.

Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes.

Pathak J, Kiefer RC, Bielinski SJ, Chute CG.

AMIA Annu Symp Proc. 2012;2012:699-708. Epub 2012 Nov 3.

PMID:
23304343
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis.

Taboada M, Martínez D, Pilo B, Jiménez-Escrig A, Robinson PN, Sobrido MJ.

BMC Med Inform Decis Mak. 2012 Jul 31;12:78. doi: 10.1186/1472-6947-12-78.

PMID:
22849591
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.

Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP.

J Biomed Inform. 2008 Oct;41(5):752-65. doi: 10.1016/j.jbi.2008.02.006. Epub 2008 Feb 29.

PMID:
18395495
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BioGateway: a semantic systems biology tool for the life sciences.

Antezana E, Blondé W, Egaña M, Rutherford A, Stevens R, De Baets B, Mironov V, Kuiper M.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S11. doi: 10.1186/1471-2105-10-S10-S11.

PMID:
19796395
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Inductive matrix completion for predicting gene-disease associations.

Natarajan N, Dhillon IS.

Bioinformatics. 2014 Jun 15;30(12):i60-i68. doi: 10.1093/bioinformatics/btu269.

PMID:
24932006
[PubMed - in process]
Free PMC Article
9.

The semantic web in translational medicine: current applications and future directions.

Machado CM, Rebholz-Schuhmann D, Freitas AT, Couto FM.

Brief Bioinform. 2013 Nov 6. [Epub ahead of print]

PMID:
24197933
[PubMed - as supplied by publisher]
10.

Introducing glycomics data into the Semantic Web.

Aoki-Kinoshita KF, Bolleman J, Campbell MP, Kawano S, Kim JD, Lütteke T, Matsubara M, Okuda S, Ranzinger R, Sawaki H, Shikanai T, Shinmachi D, Suzuki Y, Toukach P, Yamada I, Packer NH, Narimatsu H.

J Biomed Semantics. 2013 Nov 26;4(1):39. doi: 10.1186/2041-1480-4-39.

PMID:
24280648
[PubMed]
Free Article
11.

Life sciences on the Semantic Web: the Neurocommons and beyond.

Ruttenberg A, Rees JA, Samwald M, Marshall MS.

Brief Bioinform. 2009 Mar;10(2):193-204. doi: 10.1093/bib/bbp004. Epub 2009 Mar 12.

PMID:
19282504
[PubMed - indexed for MEDLINE]
Free Article
12.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

PMID:
19796394
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A semantic web ontology for small molecules and their biological targets.

Choi J, Davis MJ, Newman AF, Ragan MA.

J Chem Inf Model. 2010 May 24;50(5):732-41. doi: 10.1021/ci900461j.

PMID:
20405959
[PubMed - indexed for MEDLINE]
14.

Can social semantic web techniques foster collaborative curriculum mapping in medicine?

Spreckelsen C, Finsterer S, Cremer J, Schenkat H.

J Med Internet Res. 2013 Aug 15;15(8):e169. doi: 10.2196/jmir.2623.

PMID:
23948519
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.

Wang MC, Chen FC, Chen YZ, Huang YT, Chuang TJ.

BMC Res Notes. 2012 May 2;5:212. doi: 10.1186/1756-0500-5-212.

PMID:
22551073
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Online Mendelian Inheritance in Man (OMIM).

Hamosh A, Scott AF, Amberger J, Valle D, McKusick VA.

Hum Mutat. 2000;15(1):57-61.

PMID:
10612823
[PubMed - indexed for MEDLINE]
17.

A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi.

Parikh PP, Minning TA, Nguyen V, Lalithsena S, Asiaee AH, Sahoo SS, Doshi P, Tarleton R, Sheth AP.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1458. doi: 10.1371/journal.pntd.0001458. Epub 2012 Jan 17.

PMID:
22272365
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

From "glycosyltransferase" to "congenital muscular dystrophy": integrating knowledge from NCBI Entrez Gene and the Gene Ontology.

Sahoo SS, Zeng K, Bodenreider O, Sheth A.

Stud Health Technol Inform. 2007;129(Pt 2):1260-4.

PMID:
17911917
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.

Nelson RT, Avraham S, Shoemaker RC, May GD, Ware D, Gessler DD.

BioData Min. 2010 Jun 4;3(1):3. doi: 10.1186/1756-0381-3-3.

PMID:
20525377
[PubMed]
Free PMC Article
20.

Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases.

Wollbrett J, Larmande P, de Lamotte F, Ruiz M.

BMC Bioinformatics. 2013 Apr 15;14:126. doi: 10.1186/1471-2105-14-126.

PMID:
23586394
[PubMed - indexed for MEDLINE]
Free PMC Article

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