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Results: 1 to 20 of 110

1.

High-throughput translational medicine: challenges and solutions.

Sulakhe D, Balasubramanian S, Xie B, Berrocal E, Feng B, Taylor A, Chitturi B, Dave U, Agam G, Xu J, Börnigen D, Dubchak I, Gilliam TC, Maltsev N.

Adv Exp Med Biol. 2014;799:39-67. doi: 10.1007/978-1-4614-8778-4_3. Review.

PMID:
24292961
[PubMed - indexed for MEDLINE]
2.

Computational framework to support integration of biomolecular and clinical data within a translational approach.

Miyoshi NS, Pinheiro DG, Silva WA Jr, Felipe JC.

BMC Bioinformatics. 2013 Jun 6;14:180. doi: 10.1186/1471-2105-14-180.

PMID:
23742129
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The BioIntelligence Framework: a new computational platform for biomedical knowledge computing.

Farley T, Kiefer J, Lee P, Von Hoff D, Trent JM, Colbourn C, Mousses S.

J Am Med Inform Assoc. 2013 Jan 1;20(1):128-33. doi: 10.1136/amiajnl-2011-000646. Epub 2012 Aug 2.

PMID:
22859646
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genomics Portals: integrative web-platform for mining genomics data.

Shinde K, Phatak M, Johannes FM, Chen J, Li Q, Vineet JK, Hu Z, Ghosh K, Meller J, Medvedovic M.

BMC Genomics. 2010 Jan 13;11:27. doi: 10.1186/1471-2164-11-27.

PMID:
20070909
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Implementation of the CDC translational informatics platform--from genetic variants to the national Swedish Rheumatology Quality Register.

Abugessaisa I, Gomez-Cabrero D, Snir O, Lindblad S, Klareskog L, Malmström V, Tegnér J.

J Transl Med. 2013 Apr 2;11:85. doi: 10.1186/1479-5876-11-85.

PMID:
23548156
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Data integration and genomic medicine.

Louie B, Mork P, Martin-Sanchez F, Halevy A, Tarczy-Hornoch P.

J Biomed Inform. 2007 Feb;40(1):5-16. Epub 2006 Mar 9. Review.

PMID:
16574494
[PubMed - indexed for MEDLINE]
Free Article
7.

Mining high-throughput experimental data to link gene and function.

Blaby-Haas CE, de Crécy-Lagard V.

Trends Biotechnol. 2011 Apr;29(4):174-82. doi: 10.1016/j.tibtech.2011.01.001. Review.

PMID:
21310501
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project.

Payne PR, Jackson RD, Best TM, Borlawsky TB, Lai AM, James S, Gurcan MN.

J Am Med Inform Assoc. 2012 Nov-Dec;19(6):1110-4. doi: 10.1136/amiajnl-2011-000736. Epub 2012 May 30.

PMID:
22647689
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Combining literature text mining with microarray data: advances for system biology modeling.

Faro A, Giordano D, Spampinato C.

Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15. Review.

PMID:
21677032
[PubMed - indexed for MEDLINE]
Free Article
10.

Translational bioinformatics and systems biology approaches for personalized medicine.

Yan Q.

Methods Mol Biol. 2010;662:167-78. doi: 10.1007/978-1-60761-800-3_8.

PMID:
20824471
[PubMed - indexed for MEDLINE]
11.

Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support.

Zhou X, Chen S, Liu B, Zhang R, Wang Y, Li P, Guo Y, Zhang H, Gao Z, Yan X.

Artif Intell Med. 2010 Feb-Mar;48(2-3):139-52. doi: 10.1016/j.artmed.2009.07.012. Epub 2010 Feb 1.

PMID:
20122820
[PubMed - indexed for MEDLINE]
12.

Text-mining solutions for biomedical research: enabling integrative biology.

Rebholz-Schuhmann D, Oellrich A, Hoehndorf R.

Nat Rev Genet. 2012 Dec;13(12):829-39. doi: 10.1038/nrg3337. Epub 2012 Nov 14. Review.

PMID:
23150036
[PubMed - indexed for MEDLINE]
13.

Integrative literature and data mining to rank disease candidate genes.

Wu C, Zhu C, Jegga AG.

Methods Mol Biol. 2014;1159:207-26. doi: 10.1007/978-1-4939-0709-0_12.

PMID:
24788269
[PubMed - in process]
14.

O-miner: an integrative platform for automated analysis and mining of -omics data.

Cutts RJ, Dayem Ullah AZ, Sangaralingam A, Gadaleta E, Lemoine NR, Chelala C.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W560-8. doi: 10.1093/nar/gks432. Epub 2012 May 17.

PMID:
22600742
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GNARE: automated system for high-throughput genome analysis with grid computational backend.

Sulakhe D, Rodriguez A, D'Souza M, Wilde M, Nefedova V, Foster I, Maltsev N.

J Clin Monit Comput. 2005 Oct;19(4-5):361-9.

PMID:
16328950
[PubMed - indexed for MEDLINE]
16.

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data.

Hermida L, Poussin C, Stadler MB, Gubian S, Sewer A, Gaidatzis D, Hotz HR, Martin F, Belcastro V, Cano S, Peitsch MC, Hoeng J.

BMC Genomics. 2013 Jul 29;14:514. doi: 10.1186/1471-2164-14-514.

PMID:
23895370
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics.

Phan JH, Quo CF, Wang MD.

Prog Brain Res. 2006;158:83-108. Review.

PMID:
17027692
[PubMed - indexed for MEDLINE]
18.

MausDB: an open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects.

Maier H, Lengger C, Simic B, Fuchs H, Gailus-Durner V, Hrabé de Angelis M.

BMC Bioinformatics. 2008 Mar 26;9:169. doi: 10.1186/1471-2105-9-169.

PMID:
18366799
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Knowledge management for systems biology a general and visually driven framework applied to translational medicine.

Maier D, Kalus W, Wolff M, Kalko SG, Roca J, Marin de Mas I, Turan N, Cascante M, Falciani F, Hernandez M, Villà-Freixa J, Losko S.

BMC Syst Biol. 2011 Mar 5;5:38. doi: 10.1186/1752-0509-5-38.

PMID:
21375767
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Clinical translation of cell-based pharmacogenomic discovery.

Cox NJ, Gamazon ER, Wheeler HE, Dolan ME.

Clin Pharmacol Ther. 2012 Oct;92(4):425-7. doi: 10.1038/clpt.2012.115. Epub 2012 Aug 22. Review.

PMID:
22910437
[PubMed - indexed for MEDLINE]
Free PMC Article

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