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Results: 1 to 20 of 99

1.

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

Low TY, van Heesch S, van den Toorn H, Giansanti P, Cristobal A, Toonen P, Schafer S, Hübner N, van Breukelen B, Mohammed S, Cuppen E, Heck AJ, Guryev V.

Cell Rep. 2013 Dec 12;5(5):1469-78. doi: 10.1016/j.celrep.2013.10.041. Epub 2013 Nov 27.

PMID:
24290761
[PubMed - indexed for MEDLINE]
Free Article
2.

Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel.

Simonis M, Atanur SS, Linsen S, Guryev V, Ruzius FP, Game L, Lansu N, de Bruijn E, van Heesch S, Jones SJ, Pravenec M, Aitman TJ, Cuppen E.

Genome Biol. 2012 Apr 27;13(4):r31. doi: 10.1186/gb-2012-13-4-r31.

PMID:
22541052
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data.

Severing EI, van Dijk AD, van Ham RC.

BMC Plant Biol. 2011 May 16;11(1):82. doi: 10.1186/1471-2229-11-82.

PMID:
21575182
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identification of hypertension-related genes through an integrated genomic-transcriptomic approach.

Yagil C, Hubner N, Monti J, Schulz H, Sapojnikov M, Luft FC, Ganten D, Yagil Y.

Circ Res. 2005 Apr 1;96(6):617-25. Epub 2005 Feb 24.

PMID:
15731461
[PubMed - indexed for MEDLINE]
Free Article
5.

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage.

Cattenoz PB, Taft RJ, Westhof E, Mattick JS.

RNA. 2013 Feb;19(2):257-70. doi: 10.1261/rna.036202.112. Epub 2012 Dec 21.

PMID:
23264566
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Hepatic transcriptome and proteome responses against diethyl maleate-induced glutathione depletion in the rat.

Yamauchi S, Kiyosawa N, Ando Y, Watanabe K, Niino N, Ito K, Yamoto T, Manabe S, Sanbuissho A.

Arch Toxicol. 2011 Sep;85(9):1045-56. doi: 10.1007/s00204-010-0632-7. Epub 2010 Dec 14.

PMID:
21161181
[PubMed - indexed for MEDLINE]
7.

Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells.

Nissom PM, Sanny A, Kok YJ, Hiang YT, Chuah SH, Shing TK, Lee YY, Wong KT, Hu WS, Sim MY, Philp R.

Mol Biotechnol. 2006 Oct;34(2):125-40.

PMID:
17172658
[PubMed - indexed for MEDLINE]
8.

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.

Athanasiadis A, Rich A, Maas S.

PLoS Biol. 2004 Dec;2(12):e391. Epub 2004 Nov 9.

PMID:
15534692
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of a novel protein isoform derived from cancer-related splicing variants using combined analysis of transcriptome and proteome.

Hatakeyama K, Ohshima K, Fukuda Y, Ogura S, Terashima M, Yamaguchi K, Mochizuki T.

Proteomics. 2011 Jun;11(11):2275-82. doi: 10.1002/pmic.201100016. Epub 2011 May 5.

PMID:
21548097
[PubMed - indexed for MEDLINE]
10.

A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level.

Marisch K, Bayer K, Scharl T, Mairhofer J, Krempl PM, Hummel K, Razzazi-Fazeli E, Striedner G.

PLoS One. 2013 Aug 8;8(8):e70516. doi: 10.1371/journal.pone.0070516. eCollection 2013.

PMID:
23950949
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Integrated proteomics identified novel activation of dynein IC2-GR-COX-1 signaling in neurofibromatosis type I (NF1) disease model cells.

Hirayama M, Kobayashi D, Mizuguchi S, Morikawa T, Nagayama M, Midorikawa U, Wilson MM, Nambu AN, Yoshizawa AC, Kawano S, Araki N.

Mol Cell Proteomics. 2013 May;12(5):1377-94. doi: 10.1074/mcp.M112.024802. Epub 2013 Jan 28.

PMID:
23358504
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

On marathons and Sprints: an integrated quantitative proteomics and transcriptomics analysis of differences between slow and fast muscle fibers.

Drexler HC, Ruhs A, Konzer A, Mendler L, Bruckskotten M, Looso M, Günther S, Boettger T, Krüger M, Braun T.

Mol Cell Proteomics. 2012 Jun;11(6):M111.010801. doi: 10.1074/mcp.M111.010801. Epub 2011 Dec 30.

PMID:
22210690
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

New data analysis and mining approaches identify unique proteome and transcriptome markers of susceptibility to autoimmune diabetes.

Gerling IC, Singh S, Lenchik NI, Marshall DR, Wu J.

Mol Cell Proteomics. 2006 Feb;5(2):293-305. Epub 2005 Oct 16.

PMID:
16227630
[PubMed - indexed for MEDLINE]
Free Article
14.

Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.

Omenn GS.

Biochim Biophys Acta. 2014 May;1844(5):866-73. doi: 10.1016/j.bbapap.2013.10.016. Epub 2013 Nov 8.

PMID:
24211518
[PubMed - indexed for MEDLINE]
15.

Dissection of chromosome 18 blood pressure and salt-sensitivity quantitative trait loci in the spontaneously hypertensive rat.

Johnson MD, He L, Herman D, Wakimoto H, Wallace CA, Zidek V, Mlejnek P, Musilova A, Simakova M, Vorlicek J, Kren V, Viklicky O, Qi NR, Wang J, Seidman CE, Seidman J, Kurtz TW, Aitman TJ, Pravenec M.

Hypertension. 2009 Sep;54(3):639-45. doi: 10.1161/HYPERTENSIONAHA.108.126664. Epub 2009 Jul 20.

PMID:
19620519
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Systems-level approaches reveal conservation of trans-regulated genes in the rat and genetic determinants of blood pressure in humans.

Langley SR, Bottolo L, Kunes J, Zicha J, Zidek V, Hubner N, Cook SA, Pravenec M, Aitman TJ, Petretto E.

Cardiovasc Res. 2013 Mar 15;97(4):653-65. doi: 10.1093/cvr/cvs329. Epub 2012 Oct 31.

PMID:
23118132
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomics meets proteomics: identifying the culprits in disease.

Stunnenberg HG, Hubner NC.

Hum Genet. 2014 Jun;133(6):689-700. doi: 10.1007/s00439-013-1376-2. Epub 2013 Oct 18. Review.

PMID:
24135908
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.

Fagerberg L, Hallström BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, Habuka M, Tahmasebpoor S, Danielsson A, Edlund K, Asplund A, Sjöstedt E, Lundberg E, Szigyarto CA, Skogs M, Takanen JO, Berling H, Tegel H, Mulder J, Nilsson P, Schwenk JM, Lindskog C, Danielsson F, Mardinoglu A, Sivertsson A, von Feilitzen K, Forsberg M, Zwahlen M, Olsson I, Navani S, Huss M, Nielsen J, Ponten F, Uhlén M.

Mol Cell Proteomics. 2014 Feb;13(2):397-406. doi: 10.1074/mcp.M113.035600. Epub 2013 Dec 5.

PMID:
24309898
[PubMed - indexed for MEDLINE]
19.

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance.

Atanur SS, Birol I, Guryev V, Hirst M, Hummel O, Morrissey C, Behmoaras J, Fernandez-Suarez XM, Johnson MD, McLaren WM, Patone G, Petretto E, Plessy C, Rockland KS, Rockland C, Saar K, Zhao Y, Carninci P, Flicek P, Kurtz T, Cuppen E, Pravenec M, Hubner N, Jones SJ, Birney E, Aitman TJ.

Genome Res. 2010 Jun;20(6):791-803. doi: 10.1101/gr.103499.109. Epub 2010 Apr 29.

PMID:
20430781
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains.

Danecek P, Nellåker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ.

Genome Biol. 2012 Apr 23;13(4):26. doi: 10.1186/gb-2012-13-4-r26.

PMID:
22524474
[PubMed - indexed for MEDLINE]
Free PMC Article

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