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Structural analysis of microRNA-target interaction by sequential seed mutagenesis and stem-loop 3' RACE.

Bohmer M, Sharbati J, Zur Bruegge J, Einspanier R, Sharbati S.

PLoS One. 2013 Nov 25;8(11):e81427. doi: 10.1371/journal.pone.0081427. eCollection 2013.


Molecular architecture of a miRNA-regulated 3' UTR.

Didiano D, Hobert O.

RNA. 2008 Jul;14(7):1297-317. doi: 10.1261/rna.1082708. Epub 2008 May 7.


Next-generation sequencing of the porcine skeletal muscle transcriptome for computational prediction of microRNA gene targets.

McDaneld TG, Smith TP, Harhay GP, Wiedmann RT.

PLoS One. 2012;7(7):e42039. doi: 10.1371/journal.pone.0042039. Epub 2012 Jul 27.


The chicken miR-150 targets the avian orthologue of the functional zebrafish MYB 3'UTR target site.

Guillon-Munos A, Dambrine G, Richerioux N, Coupeau D, Muylkens B, Rasschaert D.

BMC Mol Biol. 2010 Sep 2;11:67. doi: 10.1186/1471-2199-11-67.


microPIR: an integrated database of microRNA target sites within human promoter sequences.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

PLoS One. 2012;7(3):e33888. doi: 10.1371/journal.pone.0033888. Epub 2012 Mar 16.


MicroRNA-196a regulates bovine newborn ovary homeobox gene (NOBOX) expression during early embryogenesis.

Tripurani SK, Lee KB, Wee G, Smith GW, Yao J.

BMC Dev Biol. 2011 May 6;11:25. doi: 10.1186/1471-213X-11-25.


New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. doi: 10.1101/gr.089367.108. Epub 2009 Mar 31.


A novel dual-fluorescence strategy for functionally validating microRNA targets in 3' untranslated regions: regulation of the inward rectifier potassium channel K(ir)2.1 by miR-212.

Goldoni D, Yarham JM, McGahon MK, O'Connor A, Guduric-Fuchs J, Edgar K, McDonald DM, Simpson DA, Collins A.

Biochem J. 2012 Nov 15;448(1):103-13. doi: 10.1042/BJ20120578.


Evaluating the microRNA targeting sites by luciferase reporter gene assay.

Jin Y, Chen Z, Liu X, Zhou X.

Methods Mol Biol. 2013;936:117-27.


Analysis of microRNA-target interactions by a target structure based hybridization model.

Long D, Chan CY, Ding Y.

Pac Symp Biocomput. 2008:64-74.


MicroRNA-mediated regulation of gene expression is affected by disease-associated SNPs within the 3'-UTR via altered RNA structure.

Haas U, Sczakiel G, Laufer SD.

RNA Biol. 2012 Jun;9(6):924-37. doi: 10.4161/rna.20497. Epub 2012 Jun 1.


Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites.

Li N, Flynt AS, Kim HR, Solnica-Krezel L, Patton JG.

Nucleic Acids Res. 2008 Aug;36(13):4277-85. doi: 10.1093/nar/gkn388. Epub 2008 Jun 26.


CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y.

Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22.


Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region.

Kircher M, Bock C, Paulsen M.

BMC Genomics. 2008 Jul 23;9:346. doi: 10.1186/1471-2164-9-346.


Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs.

Zhou P, Xu W, Peng X, Luo Z, Xing Q, Chen X, Hou C, Liang W, Zhou J, Wu X, Songyang Z, Jiang S.

PLoS One. 2013 Jul 9;8(7):e68204. doi: 10.1371/journal.pone.0068204. Print 2013.


Identification and characterization of novel microRNA candidates from deep sequencing.

Wu Q, Wang C, Guo L, Ge Q, Lu Z.

Clin Chim Acta. 2013 Jan 16;415:239-44. doi: 10.1016/j.cca.2012.11.002. Epub 2012 Nov 12.


Post-transcriptional regulation of ULBP1 ligand for the activating immunoreceptor NKG2D involves 3' untranslated region.

Himmelreich H, Mathys A, Wodnar-Filipowicz A, Kalberer CP.

Hum Immunol. 2011 Jun;72(6):470-8. doi: 10.1016/j.humimm.2011.03.005. Epub 2011 Mar 13.


Regulation of the Hif-system by micro-RNA 17 and 20a - role during monocyte-to-macrophage differentiation.

Poitz DM, Augstein A, Gradehand C, Ende G, Schmeisser A, Strasser RH.

Mol Immunol. 2013 Dec;56(4):442-51. doi: 10.1016/j.molimm.2013.06.014. Epub 2013 Aug 1.


Developmental RNA processing of 3'UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs.

Thomsen S, Azzam G, Kaschula R, Williams LS, Alonso CR.

Development. 2010 Sep 1;137(17):2951-60. doi: 10.1242/dev.047324. Epub 2010 Jul 28.

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