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Related Citations for PubMed (Select 24280451)


SNP-based analysis of genetic diversity in anther-derived rice by whole genome sequencing.

Jeong IS, Yoon UH, Lee GS, Ji HS, Lee HJ, Han CD, Hahn JH, An G, Kim TH.

Rice (N Y). 2013 Mar 14;6(1):6. doi: 10.1186/1939-8433-6-6.


Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.

Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K.

Plant Cell Physiol. 2011 Feb;52(2):274-82. doi: 10.1093/pcp/pcr003. Epub 2011 Jan 21.


Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M.

BMC Genomics. 2010 Apr 27;11:267. doi: 10.1186/1471-2164-11-267.


Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.

Subbaiyan GK, Waters DL, Katiyar SK, Sadananda AR, Vaddadi S, Henry RJ.

Plant Biotechnol J. 2012 Aug;10(6):623-34. doi: 10.1111/j.1467-7652.2011.00676.x. Epub 2012 Jan 6.


A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.

Srivastava SK, Wolinski P, Pereira A.

PLoS One. 2014 Sep 19;9(9):e105335. doi: 10.1371/journal.pone.0105335. eCollection 2014.


SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools.

Marklund S, Carlborg O.

BMC Genomics. 2010 Nov 25;11:665. doi: 10.1186/1471-2164-11-665.


Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance.

Jain M, Moharana KC, Shankar R, Kumari R, Garg R.

Plant Biotechnol J. 2014 Feb;12(2):253-64. doi: 10.1111/pbi.12133. Epub 2013 Oct 30.


Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity.

Hu Y, Mao B, Peng Y, Sun Y, Pan Y, Xia Y, Sheng X, Li Y, Tang L, Yuan L, Zhao B.

Mol Genet Genomics. 2014 Jun;289(3):303-15. doi: 10.1007/s00438-013-0807-z. Epub 2014 Jan 12.


Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G.

BMC Genomics. 2010 Nov 24;11:656. doi: 10.1186/1471-2164-11-656.


High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.


Whole genome resequencing in tomato reveals variation associated with introgression and breeding events.

Causse M, Desplat N, Pascual L, Le Paslier MC, Sauvage C, Bauchet G, Bérard A, Bounon R, Tchoumakov M, Brunel D, Bouchet JP.

BMC Genomics. 2013 Nov 14;14:791. doi: 10.1186/1471-2164-14-791.


A set of EST-SNPs for map saturation and cultivar identification in melon.

Deleu W, Esteras C, Roig C, González-To M, Fernández-Silva I, Gonzalez-Ibeas D, Blanca J, Aranda MA, Arús P, Nuez F, Monforte AJ, Picó MB, Garcia-Mas J.

BMC Plant Biol. 2009 Jul 15;9:90. doi: 10.1186/1471-2229-9-90.


Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.

Arai-Kichise Y, Shiwa Y, Ebana K, Shibata-Hatta M, Yoshikawa H, Yano M, Wakasa K.

PLoS One. 2014 Jan 21;9(1):e86312. doi: 10.1371/journal.pone.0086312. eCollection 2014.


Rapid genotyping of soybean cultivars using high throughput sequencing.

Varala K, Swaminathan K, Li Y, Hudson ME.

PLoS One. 2011;6(9):e24811. doi: 10.1371/journal.pone.0024811. Epub 2011 Sep 20.


Development of genome-wide DNA polymorphism database for map-based cloning of rice genes.

Shen YJ, Jiang H, Jin JP, Zhang ZB, Xi B, He YY, Wang G, Wang C, Qian L, Li X, Yu QB, Liu HJ, Chen DH, Gao JH, Huang H, Shi TL, Yang ZN.

Plant Physiol. 2004 Jul;135(3):1198-205.


[Single nucleotide polymorphism (SNP) and its application in rice].

Liu CG, Zhang GQ.

Yi Chuan. 2006 Jun;28(6):737-44. Review. Chinese.


Identification of genome-wide variations among three elite restorer lines for hybrid-rice.

Li S, Wang S, Deng Q, Zheng A, Zhu J, Liu H, Wang L, Gao F, Zou T, Huang B, Cao X, Xu L, Yu C, Ai P, Li P.

PLoS One. 2012;7(2):e30952. doi: 10.1371/journal.pone.0030952. Epub 2012 Feb 23.


Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo).

Aslam ML, Bastiaansen JW, Elferink MG, Megens HJ, Crooijmans RP, Blomberg le A, Fleischer RC, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genomics. 2012 Aug 14;13:391. doi: 10.1186/1471-2164-13-391.


HapRice, an SNP haplotype database and a web tool for rice.

Yonemaru J, Ebana K, Yano M.

Plant Cell Physiol. 2014 Jan;55(1):e9. doi: 10.1093/pcp/pct188. Epub 2013 Dec 13.


Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS.

BMC Genomics. 2011 Nov 15;12:559. doi: 10.1186/1471-2164-12-559.

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