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Items: 1 to 20 of 181

1.

SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato.

Corrado G, Piffanelli P, Caramante M, Coppola M, Rao R.

BMC Genomics. 2013 Nov 27;14:835. doi: 10.1186/1471-2164-14-835.

2.

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding.

Sim SC, Robbins MD, Chilcott C, Zhu T, Francis DM.

BMC Genomics. 2009 Oct 9;10:466. doi: 10.1186/1471-2164-10-466.

3.

High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding.

Sim SC, Van Deynze A, Stoffel K, Douches DS, Zarka D, Ganal MW, Chetelat RT, Hutton SF, Scott JW, Gardner RG, Panthee DR, Mutschler M, Myers JR, Francis DM.

PLoS One. 2012;7(9):e45520. doi: 10.1371/journal.pone.0045520. Epub 2012 Sep 20.

4.

Population structure and genetic differentiation associated with breeding history and selection in tomato (Solanum lycopersicum L.).

Sim SC, Robbins MD, Van Deynze A, Michel AP, Francis DM.

Heredity (Edinb). 2011 Jun;106(6):927-35. doi: 10.1038/hdy.2010.139. Epub 2010 Nov 17.

5.

Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato.

Robbins MD, Sim SC, Yang W, Van Deynze A, van der Knaap E, Joobeur T, Francis DM.

J Exp Bot. 2011 Mar;62(6):1831-45. doi: 10.1093/jxb/erq367. Epub 2010 Dec 30.

6.

Genomic variation in tomato, from wild ancestors to contemporary breeding accessions.

Blanca J, Montero-Pau J, Sauvage C, Bauchet G, Illa E, Díez MJ, Francis D, Causse M, van der Knaap E, Cañizares J.

BMC Genomics. 2015 Apr 1;16:257. doi: 10.1186/s12864-015-1444-1.

7.

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events.

Causse M, Desplat N, Pascual L, Le Paslier MC, Sauvage C, Bauchet G, Bérard A, Bounon R, Tchoumakov M, Brunel D, Bouchet JP.

BMC Genomics. 2013 Nov 14;14:791. doi: 10.1186/1471-2164-14-791.

8.

Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.).

Labate JA, Robertson LD, Baldo AM.

Heredity (Edinb). 2009 Sep;103(3):257-67. doi: 10.1038/hdy.2009.58. Epub 2009 May 13.

9.

Tomato breeding in the genomics era: insights from a SNP array.

Víquez-Zamora M, Vosman B, van de Geest H, Bovy A, Visser RG, Finkers R, van Heusden AW.

BMC Genomics. 2013 May 27;14:354. doi: 10.1186/1471-2164-14-354.

10.

Exploring a Tomato Landraces Collection for Fruit-Related Traits by the Aid of a High-Throughput Genomic Platform.

Sacco A, Ruggieri V, Parisi M, Festa G, Rigano MM, Picarella ME, Mazzucato A, Barone A.

PLoS One. 2015 Sep 22;10(9):e0137139. doi: 10.1371/journal.pone.0137139. eCollection 2015.

11.

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution.

Jiménez-Gómez JM, Maloof JN.

BMC Plant Biol. 2009 Jul 3;9:85. doi: 10.1186/1471-2229-9-85.

12.

Diversity in conserved genes in tomato.

Van Deynze A, Stoffel K, Buell CR, Kozik A, Liu J, van der Knaap E, Francis D.

BMC Genomics. 2007 Dec 18;8:465.

13.

Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato.

Blanca J, Cañizares J, Cordero L, Pascual L, Diez MJ, Nuez F.

PLoS One. 2012;7(10):e48198. doi: 10.1371/journal.pone.0048198. Epub 2012 Oct 31.

14.

Introgression from modern hybrid varieties into landrace populations of maize (Zea mays ssp. mays L.) in central Italy.

Bitocchi E, Nanni L, Rossi M, Rau D, Bellucci E, Giardini A, Buonamici A, Vendramin GG, Papa R.

Mol Ecol. 2009 Feb;18(4):603-21. doi: 10.1111/j.1365-294X.2008.04064.x.

PMID:
19215582
15.

Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries.

Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR.

G3 (Bethesda). 2013 Jun 21;3(6):1003-13. doi: 10.1534/g3.113.005595.

16.

Resequencing data indicate a modest effect of domestication on diversity in barley: a cultigen with multiple origins.

Morrell PL, Gonzales AM, Meyer KK, Clegg MT.

J Hered. 2014 Mar-Apr;105(2):253-64. doi: 10.1093/jhered/est083. Epub 2013 Dec 11.

17.

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.

100 Tomato Genome Sequencing Consortium, Aflitos S, Schijlen E, de Jong H, de Ridder D, Smit S, Finkers R, Wang J, Zhang G, Li N, Mao L, Bakker F, Dirks R, Breit T, Gravendeel B, Huits H, Struss D, Swanson-Wagner R, van Leeuwen H, van Ham RC, Fito L, Guignier L, Sevilla M, Ellul P, Ganko E, Kapur A, Reclus E, de Geus B, van de Geest H, Te Lintel Hekkert B, van Haarst J, Smits L, Koops A, Sanchez-Perez G, van Heusden AW, Visser R, Quan Z, Min J, Liao L, Wang X, Wang G, Yue Z, Yang X, Xu N, Schranz E, Smets E, Vos R, Rauwerda J, Ursem R, Schuit C, Kerns M, van den Berg J, Vriezen W, Janssen A, Datema E, Jahrman T, Moquet F, Bonnet J, Peters S.

Plant J. 2014 Oct;80(1):136-48. doi: 10.1111/tpj.12616. Epub 2014 Sep 3.

18.

Genome-wide characterization of genetic diversity and population structure in Secale.

Bolibok-Brągoszewska H, Targońska M, Bolibok L, Kilian A, Rakoczy-Trojanowska M.

BMC Plant Biol. 2014 Aug 1;14:184. doi: 10.1186/1471-2229-14-184.

19.

Genetic characterization of Italian tomato varieties and their traceability in tomato food products-Sardaro-2012-Food Science & Nutrition-Wiley Online Library.

Sardaro ML, Marmiroli M, Maestri E, Marmiroli N.

Food Sci Nutr. 2013 Jan;1(1):54-62. doi: 10.1002/fsn3.8. Epub 2013 Jan 8.

20.

SNP discovery and linkage map construction in cultivated tomato.

Shirasawa K, Isobe S, Hirakawa H, Asamizu E, Fukuoka H, Just D, Rothan C, Sasamoto S, Fujishiro T, Kishida Y, Kohara M, Tsuruoka H, Wada T, Nakamura Y, Sato S, Tabata S.

DNA Res. 2010 Dec;17(6):381-91. doi: 10.1093/dnares/dsq024. Epub 2010 Nov 2.

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