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Results: 1 to 20 of 106

1.

Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment.

Kvitek DJ, Sherlock G.

PLoS Genet. 2013 Nov;9(11):e1003972. doi: 10.1371/journal.pgen.1003972. Epub 2013 Nov 21.

PMID:
24278038
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency.

Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F.

PLoS Genet. 2011 Aug;7(8):e1002202. doi: 10.1371/journal.pgen.1002202. Epub 2011 Aug 4.

PMID:
21829391
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Shifting fitness landscapes in response to altered environments.

Hietpas RT, Bank C, Jensen JD, Bolon DN.

Evolution. 2013 Dec;67(12):3512-22. doi: 10.1111/evo.12207. Epub 2013 Aug 2.

PMID:
24299404
[PubMed - indexed for MEDLINE]
4.

From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.

Mustonen V, Lässig M.

Trends Genet. 2009 Mar;25(3):111-9. doi: 10.1016/j.tig.2009.01.002. Epub 2009 Feb 18.

PMID:
19232770
[PubMed - indexed for MEDLINE]
5.

Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments.

Hong J, Gresham D.

PLoS Genet. 2014 Jan;10(1):e1004041. doi: 10.1371/journal.pgen.1004041. Epub 2014 Jan 9.

PMID:
24415948
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Yeast adapts to a changing stressful environment by evolving cross-protection and anticipatory gene regulation.

Dhar R, Sägesser R, Weikert C, Wagner A.

Mol Biol Evol. 2013 Mar;30(3):573-88. doi: 10.1093/molbev/mss253. Epub 2012 Nov 2.

PMID:
23125229
[PubMed - indexed for MEDLINE]
Free Article
7.

Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape.

Kvitek DJ, Sherlock G.

PLoS Genet. 2011 Apr;7(4):e1002056. doi: 10.1371/journal.pgen.1002056. Epub 2011 Apr 28.

PMID:
21552329
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Sex enhances adaptation by unlinking beneficial from detrimental mutations in experimental yeast populations.

Gray JC, Goddard MR.

BMC Evol Biol. 2012 Mar 30;12:43. doi: 10.1186/1471-2148-12-43.

PMID:
22462622
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

How does adaptation sweep through the genome? Insights from long-term selection experiments.

Burke MK.

Proc Biol Sci. 2012 Dec 22;279(1749):5029-38. doi: 10.1098/rspb.2012.0799. Epub 2012 Jul 25. Review.

PMID:
22833271
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations.

Cooper TF, Lenski RE.

BMC Evol Biol. 2010 Jan 13;10:11. doi: 10.1186/1471-2148-10-11.

PMID:
20070898
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations.

Lang GI, Rice DP, Hickman MJ, Sodergren E, Weinstock GM, Botstein D, Desai MM.

Nature. 2013 Aug 29;500(7464):571-4. doi: 10.1038/nature12344. Epub 2013 Jul 21.

PMID:
23873039
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Multiple adaptive substitutions during evolution in novel environments.

Jain K, Seetharaman S.

Genetics. 2011 Nov;189(3):1029-43. doi: 10.1534/genetics.111.134163. Epub 2011 Sep 6.

PMID:
21900275
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.

Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ.

PLoS Genet. 2008 Dec;4(12):e1000303. doi: 10.1371/journal.pgen.1000303. Epub 2008 Dec 12.

PMID:
19079573
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast.

Gerstein AC, Lo DS, Otto SP.

Genetics. 2012 Sep;192(1):241-52. doi: 10.1534/genetics.112.142620. Epub 2012 Jun 19.

PMID:
22714405
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A critical review of adaptive genetic variation in Atlantic salmon: implications for conservation.

Garcia de Leaniz C, Fleming IA, Einum S, Verspoor E, Jordan WC, Consuegra S, Aubin-Horth N, Lajus D, Letcher BH, Youngson AF, Webb JH, Vøllestad LA, Villanueva B, Ferguson A, Quinn TP.

Biol Rev Camb Philos Soc. 2007 May;82(2):173-211. Review.

PMID:
17437557
[PubMed - indexed for MEDLINE]
16.

Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity.

Kryazhimskiy S, Rice DP, Jerison ER, Desai MM.

Science. 2014 Jun 27;344(6191):1519-22. doi: 10.1126/science.1250939.

PMID:
24970088
[PubMed - indexed for MEDLINE]
17.

Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli.

Quan S, Ray JC, Kwota Z, Duong T, Balázsi G, Cooper TF, Monds RD.

PLoS Genet. 2012 Jan;8(1):e1002444. doi: 10.1371/journal.pgen.1002444. Epub 2012 Jan 12.

PMID:
22253602
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bacterial adaptation through loss of function.

Hottes AK, Freddolino PL, Khare A, Donnell ZN, Liu JC, Tavazoie S.

PLoS Genet. 2013;9(7):e1003617. doi: 10.1371/journal.pgen.1003617. Epub 2013 Jul 11.

PMID:
23874220
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolutionary capacitance as a general feature of complex gene networks.

Bergman A, Siegal ML.

Nature. 2003 Jul 31;424(6948):549-52.

PMID:
12891357
[PubMed - indexed for MEDLINE]
20.

Constitutive versus responsive gene expression strategies for growth in changing environments.

Geisel N.

PLoS One. 2011;6(11):e27033. doi: 10.1371/journal.pone.0027033. Epub 2011 Nov 30.

PMID:
22140435
[PubMed - indexed for MEDLINE]
Free PMC Article

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