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Results: 1 to 20 of 121

1.

Integrative analysis of mRNA expression and half-life data reveals trans-acting genetic variants associated with increased expression of stable transcripts.

Nguyen TT, Seoighe C.

PLoS One. 2013 Nov 18;8(11):e79627. doi: 10.1371/journal.pone.0079627. eCollection 2013.

PMID:
24260269
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts.

Zhernakova DV, de Klerk E, Westra HJ, Mastrokolias A, Amini S, Ariyurek Y, Jansen R, Penninx BW, Hottenga JJ, Willemsen G, de Geus EJ, Boomsma DI, Veldink JH, van den Berg LH, Wijmenga C, den Dunnen JT, van Ommen GJ, 't Hoen PA, Franke L.

PLoS Genet. 2013 Jun;9(6):e1003594. doi: 10.1371/journal.pgen.1003594. Epub 2013 Jun 20. Erratum in: PLoS Genet. 2013 Sep;9(9). doi: 10.1371/annotation/296056cb-f80c-4b04-985b-180f6d3cc4ae.

PMID:
23818875
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes.

Murphy A, Chu JH, Xu M, Carey VJ, Lazarus R, Liu A, Szefler SJ, Strunk R, Demuth K, Castro M, Hansel NN, Diette GB, Vonakis BM, Adkinson NF Jr, Klanderman BJ, Senter-Sylvia J, Ziniti J, Lange C, Pastinen T, Raby BA.

Hum Mol Genet. 2010 Dec 1;19(23):4745-57. doi: 10.1093/hmg/ddq392. Epub 2010 Sep 10.

PMID:
20833654
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans.

Rotival M, Zeller T, Wild PS, Maouche S, Szymczak S, Schillert A, Castagné R, Deiseroth A, Proust C, Brocheton J, Godefroy T, Perret C, Germain M, Eleftheriadis M, Sinning CR, Schnabel RB, Lubos E, Lackner KJ, Rossmann H, Münzel T, Rendon A; Cardiogenics Consortium, Erdmann J, Deloukas P, Hengstenberg C, Diemert P, Montalescot G, Ouwehand WH, Samani NJ, Schunkert H, Tregouet DA, Ziegler A, Goodall AH, Cambien F, Tiret L, Blankenberg S.

PLoS Genet. 2011 Dec;7(12):e1002367. doi: 10.1371/journal.pgen.1002367. Epub 2011 Dec 1.

PMID:
22144904
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Expression quantitative trait loci analysis identifies associations between genotype and gene expression in human intestine.

Kabakchiev B, Silverberg MS.

Gastroenterology. 2013 Jun;144(7):1488-96, 1496.e1-3. doi: 10.1053/j.gastro.2013.03.001. Epub 2013 Mar 6.

PMID:
23474282
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.

Pai AA, Cain CE, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras JB, Degner JF, Gaffney DJ, Pickrell JK, Stephens M, Pritchard JK, Gilad Y.

PLoS Genet. 2012;8(10):e1003000. doi: 10.1371/journal.pgen.1003000. Epub 2012 Oct 11.

PMID:
23071454
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identification of single nucleotide polymorphisms regulating peripheral blood mRNA expression with genome-wide significance: an eQTL study in the Japanese population.

Sasayama D, Hori H, Nakamura S, Miyata R, Teraishi T, Hattori K, Ota M, Yamamoto N, Higuchi T, Amano N, Kunugi H.

PLoS One. 2013;8(1):e54967. doi: 10.1371/journal.pone.0054967. Epub 2013 Jan 24.

PMID:
23359819
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.

Brown CD, Mangravite LM, Engelhardt BE.

PLoS Genet. 2013;9(8):e1003649. doi: 10.1371/journal.pgen.1003649. Epub 2013 Aug 1.

PMID:
23935528
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

PMID:
16978413
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification of well-differentiated gene expressions between Han Chinese and Japanese using genome-wide microarray data analysis.

Yuan Y, Yang L, Shi M, Lu D, Lou H, Chen YP, Jin L, Xu S.

J Med Genet. 2013 Aug;50(8):534-42. doi: 10.1136/jmedgenet-2012-101501. Epub 2013 Jun 4.

PMID:
23735306
[PubMed - indexed for MEDLINE]
11.

Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA.

Fehrmann RS, Jansen RC, Veldink JH, Westra HJ, Arends D, Bonder MJ, Fu J, Deelen P, Groen HJ, Smolonska A, Weersma RK, Hofstra RM, Buurman WA, Rensen S, Wolfs MG, Platteel M, Zhernakova A, Elbers CC, Festen EM, Trynka G, Hofker MH, Saris CG, Ophoff RA, van den Berg LH, van Heel DA, Wijmenga C, Te Meerman GJ, Franke L.

PLoS Genet. 2011 Aug;7(8):e1002197. doi: 10.1371/journal.pgen.1002197. Epub 2011 Aug 4.

PMID:
21829388
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sequence polymorphisms cause many false cis eQTLs.

Alberts R, Terpstra P, Li Y, Breitling R, Nap JP, Jansen RC.

PLoS One. 2007 Jul 18;2(7):e622.

PMID:
17637838
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Human disease-associated genetic variation impacts large intergenic non-coding RNA expression.

Kumar V, Westra HJ, Karjalainen J, Zhernakova DV, Esko T, Hrdlickova B, Almeida R, Zhernakova A, Reinmaa E, Võsa U, Hofker MH, Fehrmann RS, Fu J, Withoff S, Metspalu A, Franke L, Wijmenga C.

PLoS Genet. 2013;9(1):e1003201. doi: 10.1371/journal.pgen.1003201. Epub 2013 Jan 17.

PMID:
23341781
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Heritability and tissue specificity of expression quantitative trait loci.

Petretto E, Mangion J, Dickens NJ, Cook SA, Kumaran MK, Lu H, Fischer J, Maatz H, Kren V, Pravenec M, Hubner N, Aitman TJ.

PLoS Genet. 2006 Oct 20;2(10):e172. Epub 2006 Aug 28.

PMID:
17054398
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Patterns of cis regulatory variation in diverse human populations.

Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, Durbin R, Deloukas P, Dermitzakis ET.

PLoS Genet. 2012;8(4):e1002639. doi: 10.1371/journal.pgen.1002639. Epub 2012 Apr 19.

PMID:
22532805
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

PMID:
23300628
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Expression quantitative trait loci analysis of genes in porcine muscle by quantitative real-time RT-PCR compared to microarray data.

Ponsuksili S, Murani E, Phatsara C, Schwerin M, Schellander K, Wimmers K.

Heredity (Edinb). 2010 Sep;105(3):309-17. doi: 10.1038/hdy.2010.5. Epub 2010 Feb 10.

PMID:
20145673
[PubMed - indexed for MEDLINE]
Free Article
18.

Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs.

Zhang X, Gierman HJ, Levy D, Plump A, Dobrin R, Goring HH, Curran JE, Johnson MP, Blangero J, Kim SK, O'Donnell CJ, Emilsson V, Johnson AD.

BMC Genomics. 2014 Jun 27;15:532. doi: 10.1186/1471-2164-15-532.

PMID:
24973796
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits.

Cinar MU, Kayan A, Uddin MJ, Jonas E, Tesfaye D, Phatsara C, Ponsuksili S, Wimmers K, Tholen E, Looft C, Jüngst H, Schellander K.

Mol Biol Rep. 2012 Apr;39(4):4809-21. doi: 10.1007/s11033-011-1274-4. Epub 2011 Sep 27.

PMID:
21947951
[PubMed - indexed for MEDLINE]
20.

Cis-acting expression quantitative trait loci in mice.

Doss S, Schadt EE, Drake TA, Lusis AJ.

Genome Res. 2005 May;15(5):681-91. Epub 2005 Apr 18.

PMID:
15837804
[PubMed - indexed for MEDLINE]
Free PMC Article
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