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Similar articles for PubMed (Select 24240581)

1.

Systems biology of cancer biomarker detection.

Mitra S, Das S, Chakrabarti J.

Cancer Biomark. 2013;13(4):201-13. doi: 10.3233/CBM-130363. Review.

PMID:
24240581
2.
3.

RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.

Krupp M, Marquardt JU, Sahin U, Galle PR, Castle J, Teufel A.

Bioinformatics. 2012 Apr 15;28(8):1184-5. doi: 10.1093/bioinformatics/bts084. Epub 2012 Feb 17.

4.

The UCSC genome browser and associated tools.

Kuhn RM, Haussler D, Kent WJ.

Brief Bioinform. 2013 Mar;14(2):144-61. doi: 10.1093/bib/bbs038. Epub 2012 Aug 20.

5.

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).

Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, Goldbeter A, Hace N, Henney A, Hood L, Iyengar R, Jackson V, Kallioniemi O, Klingm├╝ller U, Kolar P, Kolch W, Kyriakopoulou C, Laplace F, Lehrach H, Marcus F, Matrisian L, Nolan G, Pelkmans L, Potti A, Sander C, Seljak M, Singer D, Sorger P, Stunnenberg H, Superti-Furga G, Uhlen M, Vidal M, Weinstein J, Wigle D, Williams M, Wolkenhauer O, Zhivotovsky B, Zinovyev A, Zupan B.

Mol Oncol. 2009 Feb;3(1):9-17. doi: 10.1016/j.molonc.2008.11.003. Epub 2008 Dec 9.

6.

Relax with CouchDB--into the non-relational DBMS era of bioinformatics.

Manyam G, Payton MA, Roth JA, Abruzzo LV, Coombes KR.

Genomics. 2012 Jul;100(1):1-7. doi: 10.1016/j.ygeno.2012.05.006. Epub 2012 May 17.

7.

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.

Boria I, Boatti L, Pesole G, Mignone F.

BMC Bioinformatics. 2013;14 Suppl 7:S10. doi: 10.1186/1471-2105-14-S7-S10. Epub 2013 Apr 22.

8.

CPAP: Cancer Panel Analysis Pipeline.

Huang PJ, Yeh YM, Gan RC, Lee CC, Chen TW, Lee CY, Liu H, Chen SJ, Tang P.

Hum Mutat. 2013 Oct;34(10):1340-6. doi: 10.1002/humu.22386. Epub 2013 Aug 13.

PMID:
23893859
9.
10.

The UCSC Cancer Genomics Browser: update 2011.

Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D951-9. doi: 10.1093/nar/gkq1113. Epub 2010 Nov 8.

11.

New cancer biomarkers deriving from NCI early detection research.

Verma M, Srivastava S.

Recent Results Cancer Res. 2003;163:72-84; discussion 264-6. Review.

PMID:
12903844
12.

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data.

Barozzi I, Termanini A, Minucci S, Natoli G.

Biol Direct. 2011 Oct 6;6:51. doi: 10.1186/1745-6150-6-51.

13.

Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers.

Rhodes DR, Chinnaiyan AM.

Ann N Y Acad Sci. 2004 May;1020:32-40. Review.

PMID:
15208181
14.

Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization.

Zhang M, Zhang Y, Liu L, Yu L, Tsang S, Tan J, Yao W, Kang MS, An Y, Fan X.

BMC Bioinformatics. 2010 Aug 20;11:433. doi: 10.1186/1471-2105-11-433.

15.

Next-generation sequencing in the clinic: promises and challenges.

Xuan J, Yu Y, Qing T, Guo L, Shi L.

Cancer Lett. 2013 Nov 1;340(2):284-95. doi: 10.1016/j.canlet.2012.11.025. Epub 2012 Nov 19. Review.

PMID:
23174106
16.

AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.

Zheng HQ, Chiang-Hsieh YF, Chien CH, Hsu BK, Liu TL, Chen CN, Chang WC.

BMC Genomics. 2014 Mar 14;15:196. doi: 10.1186/1471-2164-15-196.

17.

Opportunities and methods for studying alternative splicing in cancer with RNA-Seq.

Feng H, Qin Z, Zhang X.

Cancer Lett. 2013 Nov 1;340(2):179-91. doi: 10.1016/j.canlet.2012.11.010. Epub 2012 Nov 27. Review.

PMID:
23196057
18.

iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.

Giurato G, De Filippo MR, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A.

BMC Bioinformatics. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362.

19.

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

Yang JO, Hwang S, Oh J, Bhak J, Sohn TK.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S19. doi: 10.1186/1471-2105-9-S12-S19.

20.

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.

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