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Results: 1 to 20 of 107

1.

High-resolution replication profiles define the stochastic nature of genome replication initiation and termination.

Hawkins M, Retkute R, Müller CA, Saner N, Tanaka TU, de Moura AP, Nieduszynski CA.

Cell Rep. 2013 Nov 27;5(4):1132-41. doi: 10.1016/j.celrep.2013.10.014. Epub 2013 Nov 7.

PMID:
24210825
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.

Berbenetz NM, Nislow C, Brown GW.

PLoS Genet. 2010 Sep 2;6(9):e1001092. doi: 10.1371/journal.pgen.1001092.

PMID:
20824081
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide mapping of DNA synthesis in Saccharomyces cerevisiae reveals that mechanisms preventing reinitiation of DNA replication are not redundant.

Green BM, Morreale RJ, Ozaydin B, Derisi JL, Li JJ.

Mol Biol Cell. 2006 May;17(5):2401-14. Epub 2006 Feb 15.

PMID:
16481397
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Multiple regulatory mechanisms to inhibit untimely initiation of DNA replication are important for stable genome maintenance.

Tanaka S, Araki H.

PLoS Genet. 2011 Jun;7(6):e1002136. doi: 10.1371/journal.pgen.1002136. Epub 2011 Jun 16.

PMID:
21698130
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide analysis of re-replication reveals inhibitory controls that target multiple stages of replication initiation.

Tanny RE, MacAlpine DM, Blitzblau HG, Bell SP.

Mol Biol Cell. 2006 May;17(5):2415-23. Epub 2006 Mar 8.

PMID:
16525018
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DNA replication origins fire stochastically in fission yeast.

Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N.

Mol Biol Cell. 2006 Jan;17(1):308-16. Epub 2005 Oct 26.

PMID:
16251353
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide model for the normal eukaryotic DNA replication fork.

Larrea AA, Lujan SA, Nick McElhinny SA, Mieczkowski PA, Resnick MA, Gordenin DA, Kunkel TA.

Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17674-9. doi: 10.1073/pnas.1010178107. Epub 2010 Sep 27.

PMID:
20876092
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Asymmetry indices for analysis and prediction of replication origins in eukaryotic genomes.

Marsolier-Kergoat MC.

PLoS One. 2012;7(9):e45050. doi: 10.1371/journal.pone.0045050. Epub 2012 Sep 27.

PMID:
23028755
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Quantitative, genome-wide analysis of eukaryotic replication initiation and termination.

McGuffee SR, Smith DJ, Whitehouse I.

Mol Cell. 2013 Apr 11;50(1):123-35. doi: 10.1016/j.molcel.2013.03.004. Epub 2013 Apr 4.

PMID:
23562327
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Multiple determinants controlling activation of yeast replication origins late in S phase.

Friedman KL, Diller JD, Ferguson BM, Nyland SV, Brewer BJ, Fangman WL.

Genes Dev. 1996 Jul 1;10(13):1595-607.

PMID:
8682291
[PubMed - indexed for MEDLINE]
Free Article
11.

Analyzing origin activation patterns by copy number change experiments.

Raveendranathan M, Bielinsky AK.

Methods Mol Biol. 2009;521:279-94. doi: 10.1007/978-1-60327-815-7_15.

PMID:
19563112
[PubMed - indexed for MEDLINE]
12.

Genetic and epigenetic determinants of DNA replication origins, position and activation.

Méchali M, Yoshida K, Coulombe P, Pasero P.

Curr Opin Genet Dev. 2013 Apr;23(2):124-31. doi: 10.1016/j.gde.2013.02.010. Epub 2013 Mar 28. Review.

PMID:
23541525
[PubMed - indexed for MEDLINE]
13.

A Link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast.

Hoggard T, Shor E, Müller CA, Nieduszynski CA, Fox CA.

PLoS Genet. 2013;9(9):e1003798. doi: 10.1371/journal.pgen.1003798. Epub 2013 Sep 12.

PMID:
24068963
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide characterization of fission yeast DNA replication origins.

Heichinger C, Penkett CJ, Bähler J, Nurse P.

EMBO J. 2006 Nov 1;25(21):5171-9. Epub 2006 Oct 19.

PMID:
17053780
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Surveying genome replication.

Kearsey S.

Genome Biol. 2002;3(6):REVIEWS1016. Epub 2002 May 24. Review.

PMID:
12093380
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing.

Yang SC, Rhind N, Bechhoefer J.

Mol Syst Biol. 2010 Aug 24;6:404. doi: 10.1038/msb.2010.61.

PMID:
20739926
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Coordinated control of replication and transcription by a SAPK protects genomic integrity.

Duch A, Felipe-Abrio I, Barroso S, Yaakov G, García-Rubio M, Aguilera A, de Nadal E, Posas F.

Nature. 2013 Jan 3;493(7430):116-9. doi: 10.1038/nature11675. Epub 2012 Nov 25.

PMID:
23178807
[PubMed - indexed for MEDLINE]
18.

Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data.

Luo H, Li J, Eshaghi M, Liu J, Karuturi RK.

BMC Bioinformatics. 2010 May 13;11:247. doi: 10.1186/1471-2105-11-247.

PMID:
20462459
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A DNA sequence element that advances replication origin activation time in Saccharomyces cerevisiae.

Pohl TJ, Kolor K, Fangman WL, Brewer BJ, Raghuraman MK.

G3 (Bethesda). 2013 Nov 6;3(11):1955-63. doi: 10.1534/g3.113.008250.

PMID:
24022751
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae.

Knott SR, Viggiani CJ, Tavaré S, Aparicio OM.

Genes Dev. 2009 May 1;23(9):1077-90. doi: 10.1101/gad.1784309.

PMID:
19417103
[PubMed - indexed for MEDLINE]
Free PMC Article

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