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Results: 1 to 20 of 122

1.

Novel Polyfermentor intestinal model (PolyFermS) for controlled ecological studies: validation and effect of pH.

Zihler Berner A, Fuentes S, Dostal A, Payne AN, Vazquez Gutierrez P, Chassard C, Grattepanche F, de Vos WM, Lacroix C.

PLoS One. 2013 Oct 30;8(10):e77772. doi: 10.1371/journal.pone.0077772. eCollection 2013.

PMID:
24204958
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

In vitro continuous fermentation model (PolyFermS) of the swine proximal colon for simultaneous testing on the same gut microbiota.

Tanner SA, Zihler Berner A, Rigozzi E, Grattepanche F, Chassard C, Lacroix C.

PLoS One. 2014 Apr 7;9(4):e94123. doi: 10.1371/journal.pone.0094123. eCollection 2014.

PMID:
24709947
[PubMed - in process]
Free PMC Article
3.

In vitro culture conditions for maintaining a complex population of human gastrointestinal tract microbiota.

Kim BS, Kim JN, Cerniglia CE.

J Biomed Biotechnol. 2011;2011:838040. doi: 10.1155/2011/838040. Epub 2011 Jul 24.

PMID:
21811382
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model.

McDonald JA, Schroeter K, Fuentes S, Heikamp-Dejong I, Khursigara CM, de Vos WM, Allen-Vercoe E.

J Microbiol Methods. 2013 Nov;95(2):167-74. doi: 10.1016/j.mimet.2013.08.008. Epub 2013 Aug 27.

PMID:
23994646
[PubMed - indexed for MEDLINE]
5.

The composition and metabolic activity of child gut microbiota demonstrate differential adaptation to varied nutrient loads in an in vitro model of colonic fermentation.

Payne AN, Chassard C, Banz Y, Lacroix C.

FEMS Microbiol Ecol. 2012 Jun;80(3):608-23. doi: 10.1111/j.1574-6941.2012.01330.x. Epub 2012 Mar 27.

PMID:
22324938
[PubMed - indexed for MEDLINE]
6.

Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis.

Rajilić-Stojanović M, Maathuis A, Heilig HG, Venema K, de Vos WM, Smidt H.

Microbiology. 2010 Nov;156(Pt 11):3270-81. doi: 10.1099/mic.0.042044-0. Epub 2010 Sep 16.

PMID:
20847013
[PubMed - indexed for MEDLINE]
Free Article
7.

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults.

Rajilić-Stojanović M, Heilig HG, Molenaar D, Kajander K, Surakka A, Smidt H, de Vos WM.

Environ Microbiol. 2009 Jul;11(7):1736-51. doi: 10.1111/j.1462-2920.2009.01900.x. Epub 2009 Mar 11.

PMID:
19508560
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing.

Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW.

PLoS One. 2011;6(7):e22109. doi: 10.1371/journal.pone.0022109. Epub 2011 Jul 29.

PMID:
21829445
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.

Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, De Weirdt R, Kerckhof FM, Van de Wiele T.

ISME J. 2013 May;7(5):949-61. doi: 10.1038/ismej.2012.158. Epub 2012 Dec 13.

PMID:
23235287
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level.

Tottey W, Denonfoux J, Jaziri F, Parisot N, Missaoui M, Hill D, Borrel G, Peyretaillade E, Alric M, Harris HM, Jeffery IB, Claesson MJ, O'Toole PW, Peyret P, Brugère JF.

PLoS One. 2013 May 17;8(5):e62544. doi: 10.1371/journal.pone.0062544. Print 2013.

PMID:
23690942
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Composition and stability of the microbial community inside the digestive tract of the aquatic crustacean Daphnia magna.

Freese HM, Schink B.

Microb Ecol. 2011 Nov;62(4):882-94. doi: 10.1007/s00248-011-9886-8. Epub 2011 Jun 11.

PMID:
21667195
[PubMed - indexed for MEDLINE]
12.

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.

Jalanka-Tuovinen J, Salonen A, Nikkilä J, Immonen O, Kekkonen R, Lahti L, Palva A, de Vos WM.

PLoS One. 2011;6(7):e23035. doi: 10.1371/journal.pone.0023035. Epub 2011 Jul 28.

PMID:
21829582
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Low iron availability in continuous in vitro colonic fermentations induces strong dysbiosis of the child gut microbial consortium and a decrease in main metabolites.

Dostal A, Fehlbaum S, Chassard C, Zimmermann MB, Lacroix C.

FEMS Microbiol Ecol. 2013 Jan;83(1):161-75. doi: 10.1111/j.1574-6941.2012.01461.x. Epub 2012 Aug 28.

PMID:
22845175
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats.

Van den Abbeele P, Gérard P, Rabot S, Bruneau A, El Aidy S, Derrien M, Kleerebezem M, Zoetendal EG, Smidt H, Verstraete W, Van de Wiele T, Possemiers S.

Environ Microbiol. 2011 Oct;13(10):2667-80. doi: 10.1111/j.1462-2920.2011.02533.x. Epub 2011 Aug 30.

PMID:
21883787
[PubMed - indexed for MEDLINE]
15.

New three-stage in vitro model for infant colonic fermentation with immobilized fecal microbiota.

Cinquin C, Le Blay G, Fliss I, Lacroix C.

FEMS Microbiol Ecol. 2006 Aug;57(2):324-36. Erratum in: FEMS Microbiol Ecol. 2006 Aug;57(2):340-2.

PMID:
16867149
[PubMed - indexed for MEDLINE]
16.

Immobilization of infant fecal microbiota and utilization in an in vitro colonic fermentation model.

Cinquin C, Le Blay G, Fliss I, Lacroix C.

Microb Ecol. 2004 Jul;48(1):128-38. Epub 2004 Apr 19.

PMID:
15085302
[PubMed - indexed for MEDLINE]
17.

Molecular characterisation of the faecal microbiota in patients with type II diabetes.

Wu X, Ma C, Han L, Nawaz M, Gao F, Zhang X, Yu P, Zhao C, Li L, Zhou A, Wang J, Moore JE, Millar BC, Xu J.

Curr Microbiol. 2010 Jul;61(1):69-78. doi: 10.1007/s00284-010-9582-9. Epub 2010 Jan 20.

PMID:
20087741
[PubMed - indexed for MEDLINE]
18.

Unexpected consequences of administering bacteriocinogenic probiotic strains for Salmonella populations, revealed by an in vitro colonic model of the child gut.

Zihler A, Gagnon M, Chassard C, Hegland A, Stevens MJ, Braegger CP, Lacroix C.

Microbiology. 2010 Nov;156(Pt 11):3342-53. doi: 10.1099/mic.0.042036-0. Epub 2010 Aug 5.

PMID:
20688827
[PubMed - indexed for MEDLINE]
Free Article
19.

Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE.

PLoS One. 2010 Nov 12;5(11):e13963. doi: 10.1371/journal.pone.0013963.

PMID:
21103066
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Convergent temporal dynamics of the human infant gut microbiota.

Trosvik P, Stenseth NC, Rudi K.

ISME J. 2010 Feb;4(2):151-8. doi: 10.1038/ismej.2009.96. Epub 2009 Aug 27.

PMID:
19710708
[PubMed - indexed for MEDLINE]

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