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Items: 1 to 20 of 98

1.

The effects of linkage on comparative estimators of selection.

Chan CH, Hamblin S, Tanaka MM.

BMC Evol Biol. 2013 Nov 7;13:244. doi: 10.1186/1471-2148-13-244.

2.

Clonal interference in the evolution of influenza.

Strelkowa N, Lässig M.

Genetics. 2012 Oct;192(2):671-82. doi: 10.1534/genetics.112.143396. Epub 2012 Jul 30.

4.
5.

A method for detecting positive selection at single amino acid sites.

Suzuki Y, Gojobori T.

Mol Biol Evol. 1999 Oct;16(10):1315-28.

6.

Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution.

Koel BF, Burke DF, Bestebroer TM, van der Vliet S, Zondag GC, Vervaet G, Skepner E, Lewis NS, Spronken MI, Russell CA, Eropkin MY, Hurt AC, Barr IG, de Jong JC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA, Smith DJ.

Science. 2013 Nov 22;342(6161):976-9. doi: 10.1126/science.1244730.

7.

Positive selection on the H3 hemagglutinin gene of human influenza virus A.

Bush RM, Fitch WM, Bender CA, Cox NJ.

Mol Biol Evol. 1999 Nov;16(11):1457-65.

8.

A predictive fitness model for influenza.

Luksza M, Lässig M.

Nature. 2014 Mar 6;507(7490):57-61. doi: 10.1038/nature13087. Epub 2014 Feb 26.

PMID:
24572367
9.

Genetic evolution of the neuraminidase of influenza A (H3N2) viruses from 1968 to 2009 and its correspondence to haemagglutinin evolution.

Westgeest KB, de Graaf M, Fourment M, Bestebroer TM, van Beek R, Spronken MI, de Jong JC, Rimmelzwaan GF, Russell CA, Osterhaus AD, Smith GJ, Smith DJ, Fouchier RA.

J Gen Virol. 2012 Sep;93(Pt 9):1996-2007. doi: 10.1099/vir.0.043059-0. Epub 2012 Jun 20.

10.

[Molecular evolution of human influenza H3N2 virus hemagglutinin genes in Guangdong China].

Huang P, Zhong J, Liang LJ, Hou NM, Ni HZ, Wu J, Zhang X.

Bing Du Xue Bao. 2012 Jun;28(4):330-5. Chinese.

PMID:
22978155
11.

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

Illingworth CJ, Mustonen V.

PLoS Pathog. 2012 Dec;8(12):e1003091. doi: 10.1371/journal.ppat.1003091. Epub 2012 Dec 27.

12.

Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe.

de Jong JC, Smith DJ, Lapedes AS, Donatelli I, Campitelli L, Barigazzi G, Van Reeth K, Jones TC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA.

J Virol. 2007 Apr;81(8):4315-22. Epub 2007 Feb 7.

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14.

Molecular characterization and phylogenetic analysis of H1N1 and H3N2 human influenza A viruses among infants and children in Thailand.

Chutinimitkul S, Chieochansin T, Payungporn S, Samransamruajkit R, Hiranras T, Theamboonlers A, Poovorawan Y.

Virus Res. 2008 Mar;132(1-2):122-31. Epub 2007 Dec 21.

PMID:
18160168
15.
16.

Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus.

Plotkin JB, Dushoff J.

Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7152-7. Epub 2003 May 14.

17.

Influenza A virus in Taiwan, 1980-2006: Phylogenetic and antigenic characteristics of the hemagglutinin gene.

Wang SF, Lee YM, Chan YJ, Liu HF, Yen YF, Liu WT, Huang JC, Chen YM.

J Med Virol. 2009 Aug;81(8):1457-70. doi: 10.1002/jmv.21531.

PMID:
19551820
18.

Molecular evolution of human influenza A viruses in a local area during eight influenza epidemics from 2000 to 2007.

Zaraket H, Saito R, Sato I, Suzuki Y, Li D, Dapat C, Caperig-Dapat I, Oguma T, Sasaki A, Suzuki H.

Arch Virol. 2009;154(2):285-95. doi: 10.1007/s00705-009-0309-9. Epub 2009 Jan 20.

PMID:
19153639
19.

Evidence for N-glycan shielding of antigenic sites during evolution of human influenza A virus hemagglutinin.

Kobayashi Y, Suzuki Y.

J Virol. 2012 Apr;86(7):3446-51. doi: 10.1128/JVI.06147-11. Epub 2012 Jan 18.

20.

The genetic code constrains yet facilitates Darwinian evolution.

Firnberg E, Ostermeier M.

Nucleic Acids Res. 2013 Aug;41(15):7420-8. doi: 10.1093/nar/gkt536. Epub 2013 Jun 10.

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