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A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development.

Paranjpe SS, Jacobi UG, van Heeringen SJ, Veenstra GJ.

BMC Genomics. 2013 Nov 6;14:762. doi: 10.1186/1471-2164-14-762.


RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.

Tan MH, Au KF, Yablonovitch AL, Wills AE, Chuang J, Baker JC, Wong WH, Li JB.

Genome Res. 2013 Jan;23(1):201-16. doi: 10.1101/gr.141424.112. Epub 2012 Sep 7.


High-resolution analysis of gene activity during the Xenopus mid-blastula transition.

Collart C, Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I, Sesay AK, Smith JN, Smith JC, Gilchrist MJ.

Development. 2014 May;141(9):1927-39. doi: 10.1242/dev.102012.


Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos.

Sabel JL, d'Alençon C, O'Brien EK, Van Otterloo E, Lutz K, Cuykendall TN, Schutte BC, Houston DW, Cornell RA.

Dev Biol. 2009 Jan 1;325(1):249-62. doi: 10.1016/j.ydbio.2008.10.031. Epub 2008 Nov 5.


Discovery, identification and sequence analysis of RNAs selected for very short or long poly A tail in immature bovine oocytes.

Gohin M, Fournier E, Dufort I, Sirard MA.

Mol Hum Reprod. 2014 Feb;20(2):127-38. doi: 10.1093/molehr/gat080. Epub 2013 Nov 13.


Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements.

Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS.

Genome Res. 2014 Jan;24(1):96-106. doi: 10.1101/gr.144469.112. Epub 2013 Sep 24.


Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.

Aanes H, Winata CL, Lin CH, Chen JP, Srinivasan KG, Lee SG, Lim AY, Hajan HS, Collas P, Bourque G, Gong Z, Korzh V, Aleström P, Mathavan S.

Genome Res. 2011 Aug;21(8):1328-38. doi: 10.1101/gr.116012.110. Epub 2011 May 9.


pEg6, a spire family member, is a maternal gene encoding a vegetally localized mRNA in Xenopus embryos.

Le Goff C, Laurent V, Le Bon K, Tanguy G, Couturier A, Le Goff X, Le Guellec R.

Biol Cell. 2006 Dec;98(12):697-708.


Maternal 3'UTRs: from egg to onset of zygotic transcription in Atlantic cod.

Kleppe L, Edvardsen RB, Kuhl H, Malde K, Furmanek T, Drivenes O, Reinhardt R, Taranger GL, Wargelius A.

BMC Genomics. 2012 Sep 1;13:443. doi: 10.1186/1471-2164-13-443.


Aging of Xenopus tropicalis eggs leads to deadenylation of a specific set of maternal mRNAs and loss of developmental potential.

Kosubek A, Klein-Hitpass L, Rademacher K, Horsthemke B, Ryffel GU.

PLoS One. 2010 Oct 22;5(10):e13532. doi: 10.1371/journal.pone.0013532.


Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

Jalali S, Bhartiya D, Lalwani MK, Sivasubbu S, Scaria V.

PLoS One. 2013;8(2):e53823. doi: 10.1371/journal.pone.0053823. Epub 2013 Feb 6.


Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis.

Gardner EJ, Nizami ZF, Talbot CC Jr, Gall JG.

Genes Dev. 2012 Nov 15;26(22):2550-9. doi: 10.1101/gad.202184.112.


PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.

Li A, Zhang J, Zhou Z.

BMC Bioinformatics. 2014 Sep 19;15:311. doi: 10.1186/1471-2105-15-311.


Fine mapping of genome activation in bovine embryos by RNA sequencing.

Graf A, Krebs S, Zakhartchenko V, Schwalb B, Blum H, Wolf E.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4139-44. doi: 10.1073/pnas.1321569111. Epub 2014 Mar 3.


Molecular cloning of two isoforms of Xenopus (Silurana) tropicalis estrogen receptor mRNA and their expression during development.

Takase M, Iguchi T.

Biochim Biophys Acta. 2007 Mar;1769(3):172-81. Epub 2007 Feb 7.


Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing.

Weikard R, Hadlich F, Kuehn C.

BMC Genomics. 2013 Nov 14;14:789. doi: 10.1186/1471-2164-14-789.


Deep mRNA sequencing analysis to capture the transcriptome landscape of zebrafish embryos and larvae.

Yang H, Zhou Y, Gu J, Xie S, Xu Y, Zhu G, Wang L, Huang J, Ma H, Yao J.

PLoS One. 2013 May 20;8(5):e64058. doi: 10.1371/journal.pone.0064058. Print 2013.


Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data.

Lv J, Cui W, Liu H, He H, Xiu Y, Guo J, Liu H, Liu Q, Zeng T, Chen Y, Zhang Y, Wu Q.

PLoS One. 2013 Aug 14;8(8):e71152. doi: 10.1371/journal.pone.0071152. eCollection 2013.


Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis.

Graindorge A, Le Tonquèze O, Thuret R, Pollet N, Osborne HB, Audic Y.

Nucleic Acids Res. 2008 Apr;36(6):1861-70. doi: 10.1093/nar/gkn031. Epub 2008 Feb 11.

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