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Results: 1 to 20 of 106

1.

Structural basis for the modular recognition of single-stranded RNA by PPR proteins.

Yin P, Li Q, Yan C, Liu Y, Liu J, Yu F, Wang Z, Long J, He J, Wang HW, Wang J, Zhu JK, Shi Y, Yan N.

Nature. 2013 Dec 5;504(7478):168-71. doi: 10.1038/nature12651. Epub 2013 Oct 27.

PMID:
24162847
[PubMed - indexed for MEDLINE]
2.

Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts.

Pfalz J, Bayraktar OA, Prikryl J, Barkan A.

EMBO J. 2009 Jul 22;28(14):2042-52. doi: 10.1038/emboj.2009.121. Epub 2009 May 7.

PMID:
19424177
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

Barkan A, Rojas M, Fujii S, Yap A, Chong YS, Bond CS, Small I.

PLoS Genet. 2012;8(8):e1002910. doi: 10.1371/journal.pgen.1002910. Epub 2012 Aug 16.

PMID:
22916040
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts.

Zhelyazkova P, Hammani K, Rojas M, Voelker R, Vargas-Suárez M, Börner T, Barkan A.

Nucleic Acids Res. 2012 Apr;40(7):3092-105. doi: 10.1093/nar/gkr1137. Epub 2011 Dec 8.

PMID:
22156165
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein.

Prikryl J, Rojas M, Schuster G, Barkan A.

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):415-20. doi: 10.1073/pnas.1012076108. Epub 2010 Dec 20.

PMID:
21173259
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.

Williams-Carrier R, Kroeger T, Barkan A.

RNA. 2008 Sep;14(9):1930-41. doi: 10.1261/rna.1077708. Epub 2008 Jul 30.

PMID:
18669444
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Structural basis for RNA recognition by a dimeric PPR-protein complex.

Ke J, Chen RZ, Ban T, Zhou XE, Gu X, Tan MH, Chen C, Kang Y, Brunzelle JS, Zhu JK, Melcher K, Xu HE.

Nat Struct Mol Biol. 2013 Dec;20(12):1377-82. doi: 10.1038/nsmb.2710. Epub 2013 Nov 3.

PMID:
24186060
[PubMed - indexed for MEDLINE]
8.

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates.

Schmitz-Linneweber C, Williams-Carrier R, Barkan A.

Plant Cell. 2005 Oct;17(10):2791-804. Epub 2005 Sep 2.

PMID:
16141451
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A chloroplast-localized PPR protein required for plastid ribosome accumulation.

Williams PM, Barkan A.

Plant J. 2003 Dec;36(5):675-86.

PMID:
14617068
[PubMed - indexed for MEDLINE]
10.

The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts.

Beick S, Schmitz-Linneweber C, Williams-Carrier R, Jensen B, Barkan A.

Mol Cell Biol. 2008 Sep;28(17):5337-47. doi: 10.1128/MCB.00563-08. Epub 2008 Jun 30.

PMID:
18591259
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Pentatricopeptide repeat proteins involved in plant organellar RNA editing.

Yagi Y, Tachikawa M, Noguchi H, Satoh S, Obokata J, Nakamura T.

RNA Biol. 2013 Sep;10(9):1419-25. doi: 10.4161/rna.24908. Epub 2013 May 3.

PMID:
23669716
[PubMed - in process]
Free PMC Article
12.

RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs.

Luro S, Germain A, Sharwood RE, Stern DB.

Nucleic Acids Res. 2013 Oct;41(19):9141-51. doi: 10.1093/nar/gkt640. Epub 2013 Aug 6.

PMID:
23921629
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development.

Sosso D, Canut M, Gendrot G, Dedieu A, Chambrier P, Barkan A, Consonni G, Rogowsky PM.

J Exp Bot. 2012 Oct;63(16):5843-57. doi: 10.1093/jxb/ers232. Epub 2012 Sep 3.

PMID:
22945943
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

Schallenberg-Rüdinger M, Kindgren P, Zehrmann A, Small I, Knoop V.

Plant J. 2013 Nov;76(3):420-32. doi: 10.1111/tpj.12304. Epub 2013 Sep 10.

PMID:
23909746
[PubMed - indexed for MEDLINE]
15.

Pentatricopeptide repeat proteins and their emerging roles in plants.

Saha D, Prasad AM, Srinivasan R.

Plant Physiol Biochem. 2007 Aug;45(8):521-34. Epub 2007 Mar 24. Review.

PMID:
17560114
[PubMed - indexed for MEDLINE]
16.

A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA.

Schmitz-Linneweber C, Williams-Carrier RE, Williams-Voelker PM, Kroeger TS, Vichas A, Barkan A.

Plant Cell. 2006 Oct;18(10):2650-63. Epub 2006 Oct 13.

PMID:
17041147
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids.

Okuda K, Shikanai T.

Nucleic Acids Res. 2012 Jun;40(11):5052-64. doi: 10.1093/nar/gks164. Epub 2012 Feb 22.

PMID:
22362750
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition.

Ban T, Ke J, Chen R, Gu X, Tan MH, Zhou XE, Kang Y, Melcher K, Zhu JK, Xu HE.

J Biol Chem. 2013 Nov 1;288(44):31540-8. doi: 10.1074/jbc.M113.496828. Epub 2013 Sep 18.

PMID:
24047899
[PubMed - indexed for MEDLINE]
19.

The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA.

Zoschke R, Kroeger T, Belcher S, Schöttler MA, Barkan A, Schmitz-Linneweber C.

Plant J. 2012 Nov;72(4):547-58. doi: 10.1111/j.1365-313X.2012.05081.x. Epub 2012 Oct 8.

PMID:
22708543
[PubMed - indexed for MEDLINE]
20.

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.

Yagi Y, Hayashi S, Kobayashi K, Hirayama T, Nakamura T.

PLoS One. 2013;8(3):e57286. doi: 10.1371/journal.pone.0057286. Epub 2013 Mar 5.

PMID:
23472078
[PubMed - indexed for MEDLINE]
Free PMC Article

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