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Similar articles for PubMed (Select 24123140)

1.

Performance of ZDOCK in CAPRI rounds 20-26.

Vreven T, Pierce BG, Hwang H, Weng Z.

Proteins. 2013 Oct 3. doi: 10.1002/prot.24432. [Epub ahead of print]

2.

The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.

Wiehe K, Pierce B, Tong WW, Hwang H, Mintseris J, Weng Z.

Proteins. 2007 Dec 1;69(4):719-25.

PMID:
17803212
3.

Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.

Hwang H, Vreven T, Pierce BG, Hung JH, Weng Z.

Proteins. 2010 Nov 15;78(15):3104-10. doi: 10.1002/prot.22764.

4.

A combination of rescoring and refinement significantly improves protein docking performance.

Pierce B, Weng Z.

Proteins. 2008 Jul;72(1):270-9. doi: 10.1002/prot.21920.

5.

Integrating atom-based and residue-based scoring functions for protein-protein docking.

Vreven T, Hwang H, Weng Z.

Protein Sci. 2011 Sep;20(9):1576-86. doi: 10.1002/pro.687. Epub 2011 Aug 8.

6.

ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.

Wiehe K, Pierce B, Mintseris J, Tong WW, Anderson R, Chen R, Weng Z.

Proteins. 2005 Aug 1;60(2):207-13.

PMID:
15981263
7.

CyClus: a fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body protein-protein docking decoys.

Omori S, Kitao A.

Proteins. 2013 Jun;81(6):1005-16. doi: 10.1002/prot.24252. Epub 2013 Feb 27.

PMID:
23344972
8.

Docking, scoring, and affinity prediction in CAPRI.

Lensink MF, Wodak SJ.

Proteins. 2013 Dec;81(12):2082-95. doi: 10.1002/prot.24428. Epub 2013 Oct 17.

PMID:
24115211
9.

Score_set: a CAPRI benchmark for scoring protein complexes.

Lensink MF, Wodak SJ.

Proteins. 2014 Nov;82(11):3163-9. doi: 10.1002/prot.24678. Epub 2014 Sep 11.

PMID:
25179222
10.

CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

de Vries SJ, Bonvin AM.

PLoS One. 2011 Mar 25;6(3):e17695. doi: 10.1371/journal.pone.0017695.

11.

How different from random are docking predictions when ranked by scoring functions?

Feliu E, Oliva B.

Proteins. 2010 Dec;78(16):3376-85. doi: 10.1002/prot.22844. Epub 2010 Sep 16.

PMID:
20848549
12.

Protein-protein docking with F(2)Dock 2.0 and GB-rerank.

Chowdhury R, Rasheed M, Keidel D, Moussalem M, Olson A, Sanner M, Bajaj C.

PLoS One. 2013;8(3):e51307. doi: 10.1371/journal.pone.0051307. Epub 2013 Mar 6.

13.

Present and future challenges and limitations in protein-protein docking.

Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J.

Proteins. 2010 Jan;78(1):95-108. doi: 10.1002/prot.22564.

PMID:
19731373
14.

ZRANK: reranking protein docking predictions with an optimized energy function.

Pierce B, Weng Z.

Proteins. 2007 Jun 1;67(4):1078-86.

PMID:
17373710
15.

Predicting protein complex geometries with a neural network.

Chae MH, Krull F, Lorenzen S, Knapp EW.

Proteins. 2010 Mar;78(4):1026-39. doi: 10.1002/prot.22626.

PMID:
19938153
16.

Docking and scoring protein interactions: CAPRI 2009.

Lensink MF, Wodak SJ.

Proteins. 2010 Nov 15;78(15):3073-84. doi: 10.1002/prot.22818.

PMID:
20806235
18.
19.

Improving CAPRI predictions: optimized desolvation for rigid-body docking.

Fernández-Recio J, Abagyan R, Totrov M.

Proteins. 2005 Aug 1;60(2):308-13.

PMID:
15981266
20.

Docking and scoring protein complexes: CAPRI 3rd Edition.

Lensink MF, Méndez R, Wodak SJ.

Proteins. 2007 Dec 1;69(4):704-18.

PMID:
17918726
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