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Results: 1 to 20 of 113

1.

Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

Cline MS, Craft B, Swatloski T, Goldman M, Ma S, Haussler D, Zhu J.

Sci Rep. 2013 Oct 2;3:2652. doi: 10.1038/srep02652.

PMID:
24084870
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The UCSC Cancer Genomics Browser: update 2011.

Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D951-9. doi: 10.1093/nar/gkq1113. Epub 2010 Nov 8.

PMID:
21059681
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The UCSC Cancer Genomics Browser: update 2013.

Goldman M, Craft B, Swatloski T, Ellrott K, Cline M, Diekhans M, Ma S, Wilks C, Stuart J, Haussler D, Zhu J.

Nucleic Acids Res. 2013 Jan;41(Database issue):D949-54. doi: 10.1093/nar/gks1008. Epub 2012 Oct 29.

PMID:
23109555
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

ENCODE whole-genome data in the UCSC Genome Browser.

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5. doi: 10.1093/nar/gkp961. Epub 2009 Nov 17.

PMID:
19920125
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Exploring relationships and mining data with the UCSC Gene Sorter.

Kent WJ, Hsu F, Karolchik D, Kuhn RM, Clawson H, Trumbower H, Haussler D.

Genome Res. 2005 May;15(5):737-41.

PMID:
15867434
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The UCSC genome browser: what every molecular biologist should know.

Mangan ME, Williams JM, Kuhn RM, Lathe WC 3rd.

Curr Protoc Mol Biol. 2009 Oct;Chapter 19:Unit19.9. doi: 10.1002/0471142727.mb1909s88. Review.

PMID:
19816931
[PubMed - indexed for MEDLINE]
7.

The UCSC Genome Browser Database.

Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ; University of California Santa Cruz.

Nucleic Acids Res. 2003 Jan 1;31(1):51-4.

PMID:
12519945
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE.

Bioinformatics. 2009 Oct 15;25(20):2730-1. doi: 10.1093/bioinformatics/btp472. Epub 2009 Aug 4.

PMID:
19654113
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Visualizing multidimensional cancer genomics data.

Schroeder MP, Gonzalez-Perez A, Lopez-Bigas N.

Genome Med. 2013 Jan 31;5(1):9. doi: 10.1186/gm413. eCollection 2013. Review.

PMID:
23363777
[PubMed]
Free PMC Article
10.

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Raney BJ, Dreszer TR, Barber GP, Clawson H, Fujita PA, Wang T, Nguyen N, Paten B, Zweig AS, Karolchik D, Kent WJ.

Bioinformatics. 2014 Apr 1;30(7):1003-5. doi: 10.1093/bioinformatics/btt637. Epub 2013 Nov 13.

PMID:
24227676
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The UCSC genome browser and associated tools.

Kuhn RM, Haussler D, Kent WJ.

Brief Bioinform. 2013 Mar;14(2):144-61. doi: 10.1093/bib/bbs038. Epub 2012 Aug 20.

PMID:
22908213
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Comparative genomic analysis using the UCSC genome browser.

Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ.

Methods Mol Biol. 2007;395:17-34.

PMID:
17993665
[PubMed - indexed for MEDLINE]
13.

The UCSC Genome Browser database: extensions and updates 2013.

Meyer LR, Zweig AS, Hinrichs AS, Karolchik D, Kuhn RM, Wong M, Sloan CA, Rosenbloom KR, Roe G, Rhead B, Raney BJ, Pohl A, Malladi VS, Li CH, Lee BT, Learned K, Kirkup V, Hsu F, Heitner S, Harte RA, Haeussler M, Guruvadoo L, Goldman M, Giardine BM, Fujita PA, Dreszer TR, Diekhans M, Cline MS, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9. doi: 10.1093/nar/gks1048. Epub 2012 Nov 15.

PMID:
23155063
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The UCSC Table Browser data retrieval tool.

Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6.

PMID:
14681465
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The genome browser at UCSC for locating genes, and much more!

Bina M.

Mol Biotechnol. 2008 Mar;38(3):269-75. Epub 2007 Dec 4. Review.

PMID:
18058261
[PubMed - indexed for MEDLINE]
16.

The UCSC Genome Browser database: 2014 update.

Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, Diekhans M, Dreszer TR, Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hinrichs AS, Learned K, Lee BT, Li CH, Raney BJ, Rhead B, Rosenbloom KR, Sloan CA, Speir ML, Zweig AS, Haussler D, Kuhn RM, Kent WJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D764-70. doi: 10.1093/nar/gkt1168. Epub 2013 Nov 21.

PMID:
24270787
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Hum Genet. 2011 Oct;Chapter 18:Unit18.6. doi: 10.1002/0471142905.hg1806s71.

PMID:
21975940
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

PMID:
19906737
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Bioinformatics. 2012 Dec;Chapter 1:Unit1.4. doi: 10.1002/0471250953.bi0104s40.

PMID:
23255150
[PubMed - indexed for MEDLINE]
20.

Piloting the zebrafish genome browser.

DiBiase A, Harte RA, Zhou Y, Zon L, Kent WJ.

Dev Dyn. 2006 Mar;235(3):747-53.

PMID:
16372332
[PubMed - indexed for MEDLINE]
Free Article

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