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Results: 1 to 20 of 127

1.

Rapid genotyping using pyrene-perylene locked nucleic acid complexes.

Kumar TS, Myznikova A, Samokhina E, Astakhova IK.

Artif DNA PNA XNA. 2013 Apr-Jun;4(2):58-68. doi: 10.4161/adna.25903.

PMID:
24044052
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

An efficient fluorescence resonance energy transfer (FRET) between pyrene and perylene assembled in a DNA duplex and its potential for discriminating single-base changes.

Kashida H, Takatsu T, Sekiguchi K, Asanuma H.

Chemistry. 2010 Feb 22;16(8):2479-86. doi: 10.1002/chem.200902078.

PMID:
20066689
[PubMed - indexed for MEDLINE]
3.

Novel (phenylethynyl)pyrene-LNA constructs for fluorescence SNP sensing in polymorphic nucleic acid targets.

Astakhova IK, Samokhina E, Babu BR, Wengel J.

Chembiochem. 2012 Jul 9;13(10):1509-19. doi: 10.1002/cbic.201200079. Epub 2012 Jun 14.

PMID:
22761036
[PubMed - indexed for MEDLINE]
4.

Pyrene-perylene as a FRET pair coupled to the N2'-functionality of 2'-amino-LNA.

Lindegaard D, Madsen AS, Astakhova IV, Malakhov AD, Babu BR, Korshun VA, Wengel J.

Bioorg Med Chem. 2008 Jan 1;16(1):94-9. Epub 2007 May 3.

PMID:
17920888
[PubMed - indexed for MEDLINE]
5.

Efficient energy transfer from pyrene to perylene assembled inside DNA duplex.

Kashida H, Takatsu T, Asanuma H.

Nucleic Acids Symp Ser (Oxf). 2009;(53):29-30. doi: 10.1093/nass/nrp015.

PMID:
19749244
[PubMed - indexed for MEDLINE]
Free Article
6.

Branched DNA nanostructures efficiently stabilised and monitored by novel pyrene-perylene 2'-α-L-amino-LNA FRET pairs.

Astakhova IK, Kumar TS, Campbell MA, Ustinov AV, Korshun VA, Wengel J.

Chem Commun (Camb). 2013 Jan 18;49(5):511-3. doi: 10.1039/c2cc37547h.

PMID:
23201901
[PubMed - indexed for MEDLINE]
7.

Perylene attached to 2'-amino-LNA: synthesis, incorporation into oligonucleotides, and remarkable fluorescence properties in vitro and in cell culture.

Astakhova IV, Korshun VA, Jahn K, Kjems J, Wengel J.

Bioconjug Chem. 2008 Oct;19(10):1995-2007. doi: 10.1021/bc800202v. Epub 2008 Sep 5.

PMID:
18771303
[PubMed - indexed for MEDLINE]
8.

Highly fluorescent conjugated pyrenes in nucleic acid probes: (phenylethynyl)pyrenecarbonyl-functionalized locked nucleic acids.

Astakhova IV, Korshun VA, Wengel J.

Chemistry. 2008;14(35):11010-26. doi: 10.1002/chem.200801077.

PMID:
18979465
[PubMed - indexed for MEDLINE]
9.

Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions.

Masuko M, Ohuchi S, Sode K, Ohtani H, Shimadzu A.

Nucleic Acids Res. 2000 Apr 15;28(8):E34.

PMID:
10734211
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Accumulation of fluorophores into DNA duplexes to mimic the properties of quantum dots.

Kashida H, Sekiguchi K, Liang X, Asanuma H.

J Am Chem Soc. 2010 May 5;132(17):6223-30. doi: 10.1021/ja101007d.

PMID:
20380398
[PubMed - indexed for MEDLINE]
11.

Development of a robust model system of FRET using base surrogates tethering fluorophores for strict control of their position and orientation within DNA duplex.

Kato T, Kashida H, Kishida H, Yada H, Okamoto H, Asanuma H.

J Am Chem Soc. 2013 Jan 16;135(2):741-50. doi: 10.1021/ja309279w. Epub 2013 Jan 8.

PMID:
23240980
[PubMed - indexed for MEDLINE]
12.

SNP detection in mRNA in living cells using allele specific FRET probes.

Dahan L, Huang L, Kedmi R, Behlke MA, Peer D.

PLoS One. 2013 Sep 9;8(9):e72389. doi: 10.1371/journal.pone.0072389. eCollection 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/d41768c5-b58a-4355-ad17-166f70e347b8.

PMID:
24039756
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Multilabeled pyrene-functionalized 2'-amino-LNA probes for nucleic acid detection in homogeneous fluorescence assays.

Hrdlicka PJ, Babu BR, Sørensen MD, Harrit N, Wengel J.

J Am Chem Soc. 2005 Sep 28;127(38):13293-9.

PMID:
16173760
[PubMed - indexed for MEDLINE]
14.

Sensitive SNP dual-probe assays based on pyrene-functionalized 2'-amino-LNA: lessons to be learned.

Umemoto T, Hrdlicka PJ, Babu BR, Wengel J.

Chembiochem. 2007 Dec 17;8(18):2240-8.

PMID:
17979173
[PubMed - indexed for MEDLINE]
15.

Preparation of supramolecular chromophoric assemblies using a DNA duplex.

Kashida H, Asanuma H.

Phys Chem Chem Phys. 2012 May 28;14(20):7196-204. doi: 10.1039/c2cp40520b. Epub 2012 Apr 24.

PMID:
22532160
[PubMed - indexed for MEDLINE]
16.

5'-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure.

Kostenko E, Dobrikov M, Pyshnyi D, Petyuk V, Komarova N, Vlassov V, Zenkova M.

Nucleic Acids Res. 2001 Sep 1;29(17):3611-20.

PMID:
11522831
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Homogeneous DNA-detection based on the non-enzymatic reactions promoted by target DNA.

Ihara T, Mukae M.

Anal Sci. 2007 Jun;23(6):625-9. Review.

PMID:
17575342
[PubMed - indexed for MEDLINE]
Free Article
18.

Modulation of pyrene fluorescence in DNA probes depends upon the nature of the conformationally restricted nucleotide.

Honcharenko D, Zhou C, Chattopadhyaya J.

J Org Chem. 2008 Apr 4;73(7):2829-42. doi: 10.1021/jo702747w. Epub 2008 Mar 11.

PMID:
18331060
[PubMed - indexed for MEDLINE]
19.

A locked nucleic acid-based nanocrawler: designed and reversible movement detected by multicolor fluorescence.

Astakhova IK, Pasternak K, Campbell MA, Gupta P, Wengel J.

J Am Chem Soc. 2013 Feb 20;135(7):2423-6. doi: 10.1021/ja311250w. Epub 2013 Feb 8.

PMID:
23379691
[PubMed - indexed for MEDLINE]
20.

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