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Items: 1 to 20 of 127

1.
2.

Patterns of evolution and host gene mimicry in influenza and other RNA viruses.

Greenbaum BD, Levine AJ, Bhanot G, Rabadan R.

PLoS Pathog. 2008 Jun 6;4(6):e1000079. doi: 10.1371/journal.ppat.1000079.

4.

Sequence context analysis of 8.2 million single nucleotide polymorphisms in the human genome.

Zhao Z, Zhang F.

Gene. 2006 Feb 1;366(2):316-24. Epub 2005 Nov 28.

PMID:
16314054
6.

Evolution of the genome and the genetic code: selection at the dinucleotide level by methylation and polyribonucleotide cleavage.

Beutler E, Gelbart T, Han JH, Koziol JA, Beutler B.

Proc Natl Acad Sci U S A. 1989 Jan;86(1):192-6.

7.

Modeling the impact of DNA methylation on the evolution of BRCA1 in mammals.

Huttley GA.

Mol Biol Evol. 2004 Sep;21(9):1760-8. Epub 2004 Jun 9.

8.

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome.

Xia J, Han L, Zhao Z.

BMC Genomics. 2012;13 Suppl 8:S7. doi: 10.1186/1471-2164-13-S8-S7. Epub 2012 Dec 17.

9.

Dinucleotide and stop codon frequencies in single-stranded RNA viruses.

Rima BK, McFerran NV.

J Gen Virol. 1997 Nov;78 ( Pt 11):2859-70.

PMID:
9367373
10.

Estimation of DNA sequence context-dependent mutation rates using primate genomic sequences.

Zhang W, Bouffard GG, Wallace SS, Bond JP; NISC Comparative Sequencing Program.

J Mol Evol. 2007 Sep;65(3):207-14. Epub 2007 Aug 4.

PMID:
17676366
11.

Systematic CpT (ApG) depletion and CpG excess are unique genomic signatures of large DNA viruses infecting invertebrates.

Upadhyay M, Sharma N, Vivekanandan P.

PLoS One. 2014 Nov 4;9(11):e111793. doi: 10.1371/journal.pone.0111793. eCollection 2014.

12.

Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation.

Elango N, Kim SH, Vigoda E, Yi SV.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000015. doi: 10.1371/journal.pcbi.1000015.

14.

Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals.

Simmen MW.

Genomics. 2008 Jul;92(1):33-40. doi: 10.1016/j.ygeno.2008.03.009. Epub 2008 May 15.

15.

Deviations from expected frequencies of CpG dinucleotides in herpesvirus DNAs may be diagnostic of differences in the states of their latent genomes.

Honess RW, Gompels UA, Barrell BG, Craxton M, Cameron KR, Staden R, Chang YN, Hayward GS.

J Gen Virol. 1989 Apr;70 ( Pt 4):837-55.

PMID:
2732708
16.

Factors to preserve CpG-rich sequences in methylated CpG islands.

Miyahara H, Hirose O, Satou K, Yamada Y.

BMC Genomics. 2015 Feb 28;16:144. doi: 10.1186/s12864-015-1286-x.

17.
18.

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication.

Atkinson NJ, Witteveldt J, Evans DJ, Simmonds P.

Nucleic Acids Res. 2014 Apr;42(7):4527-45. doi: 10.1093/nar/gku075. Epub 2014 Jan 26.

19.
20.

The complementary neighborhood patterns and methylation-to-mutation likelihood structures of 15,110 single-nucleotide polymorphisms in the bovine genome.

Jiang Z, Wu XL, Zhang M, Michal JJ, Wright RW Jr.

Genetics. 2008 Sep;180(1):639-47. doi: 10.1534/genetics.108.090860. Epub 2008 Aug 20.

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