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A microbial profiling method for the human microbiota using high-throughput sequencing.

Tseng HH, Hullar MA, Li F, Lampe JW, Sandstrom R, Johnson AK, Strate LL, Ruzzo WL, Stamatoyannopoulos J.

Metagenomics (Cairo). 2013;2:235646.


Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma.

PĂ©rez-Losada M, Castro-Nallar E, Bendall ML, Freishtat RJ, Crandall KA.

PLoS One. 2015 Jun 30;10(6):e0131819. doi: 10.1371/journal.pone.0131819. eCollection 2015.


The human microbiome in hematopoiesis and hematological disorders.

Manzo VE, Bhatt AS.

Blood. 2015 May 26. pii: blood-2015-04-574392. [Epub ahead of print]


Sinonasal microbiome sampling: a comparison of techniques.

Bassiouni A, Cleland EJ, Psaltis AJ, Vreugde S, Wormald PJ.

PLoS One. 2015 Apr 14;10(4):e0123216. doi: 10.1371/journal.pone.0123216. eCollection 2015.


Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences.

Wagner Mackenzie B, Waite DW, Taylor MW.

Front Microbiol. 2015 Feb 18;6:130. doi: 10.3389/fmicb.2015.00130. eCollection 2015.


Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML.

MBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14.


A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome.

Warinner C, Speller C, Collins MJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130376. doi: 10.1098/rstb.2013.0376.


Sampling of intestinal microbiota and targeted amplification of bacterial 16S rRNA genes for microbial ecologic analysis.

Tong M, Jacobs JP, McHardy IH, Braun J.

Curr Protoc Immunol. 2014 Nov 3;107:Unit 7.41.. doi: 10.1002/0471142735.im0741s107.


Application of high-throughput sequencing in understanding human oral microbiome related with health and disease.

Chen H, Jiang W.

Front Microbiol. 2014 Oct 13;5:508. doi: 10.3389/fmicb.2014.00508. eCollection 2014. Review.


Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform.

Dassi E, Ballarini A, Covello G; HTM-CMB2013, Quattrone A, Jousson O, De Sanctis V, Bertorelli R, Denti MA, Segata N.

J Biotechnol. 2014 Nov 20;190:30-9. doi: 10.1016/j.jbiotec.2014.03.024. Epub 2014 Mar 23.


Recruiting human microbiome shotgun data to site-specific reference genomes.

Xie G, Lo CC, Scholz M, Chain PS.

PLoS One. 2014 Jan 15;9(1):e84963. doi: 10.1371/journal.pone.0084963. eCollection 2014.


From meta-omics to causality: experimental models for human microbiome research.

Fritz JV, Desai MS, Shah P, Schneider JG, Wilmes P.

Microbiome. 2013 May 3;1(1):14. doi: 10.1186/2049-2618-1-14.


Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform.

Fichot EB, Norman RS.

Microbiome. 2013 Mar 4;1(1):10. doi: 10.1186/2049-2618-1-10.


Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ.

Guinane CM, Cotter PD.

Therap Adv Gastroenterol. 2013 Jul;6(4):295-308. doi: 10.1177/1756283X13482996.


Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.

Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF.

PLoS One. 2013;8(2):e56018. doi: 10.1371/journal.pone.0056018. Epub 2013 Feb 6.


Pyrosequencing the canine faecal microbiota: breadth and depth of biodiversity.

Hand D, Wallis C, Colyer A, Penn CW.

PLoS One. 2013;8(1):e53115. doi: 10.1371/journal.pone.0053115. Epub 2013 Jan 31.


Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing.

Cheung MK, Lam WY, Fung WY, Law PT, Au CH, Nong W, Kam KM, Kwan HS, Tsui SK.

PLoS One. 2013;8(1):e54574. doi: 10.1371/journal.pone.0054574. Epub 2013 Jan 24.


Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U.

PLoS One. 2013;8(1):e53838. doi: 10.1371/journal.pone.0053838. Epub 2013 Jan 22.


Microbial composition of human appendices from patients following appendectomy.

Guinane CM, Tadrous A, Fouhy F, Ryan CA, Dempsey EM, Murphy B, Andrews E, Cotter PD, Stanton C, Ross RP.

MBio. 2013 Jan 15;4(1). pii: e00366-12. doi: 10.1128/mBio.00366-12.


Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.

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