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Results: 1 to 20 of 116

1.

Small insertions are more deleterious than small deletions in human genomes.

Huang S, Li J, Xu A, Huang G, You L.

Hum Mutat. 2013 Dec;34(12):1642-9. doi: 10.1002/humu.22435. Epub 2013 Sep 18.

PMID:
24000181
[PubMed - indexed for MEDLINE]
2.

More single-nucleotide mutations surround small insertions than small deletions in primates.

Huang S, Yu T, Chen Z, Yuan S, Chen S, Xu A.

Hum Mutat. 2012 Jul;33(7):1099-106. doi: 10.1002/humu.22085. Epub 2012 Apr 9.

PMID:
22461281
[PubMed - indexed for MEDLINE]
3.

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome.

Kvikstad EM, Duret L.

Mol Biol Evol. 2014 Jan;31(1):23-36. doi: 10.1093/molbev/mst185. Epub 2013 Oct 9.

PMID:
24113537
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection.

Leushkin EV, Bazykin GA, Kondrashov AS.

Genome Biol Evol. 2013;5(3):514-24. doi: 10.1093/gbe/evt021.

PMID:
23395983
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions.

Kvikstad EM, Chiaromonte F, Makova KD.

Genome Res. 2009 Jul;19(7):1153-64. doi: 10.1101/gr.088922.108. Epub 2009 Jun 5.

PMID:
19502380
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Functional constraint and small insertions and deletions in the ENCODE regions of the human genome.

Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ.

Genome Biol. 2007;8(9):R180.

PMID:
17784950
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.

PMID:
23478400
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates.

Brandström M, Ellegren H.

Genetics. 2007 Jul;176(3):1691-701. Epub 2007 May 16.

PMID:
17507681
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An initial map of insertion and deletion (INDEL) variation in the human genome.

Mills RE, Luttig CT, Larkins CE, Beauchamp A, Tsui C, Pittard WS, Devine SE.

Genome Res. 2006 Sep;16(9):1182-90. Epub 2006 Aug 10.

PMID:
16902084
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW.

BMC Genomics. 2009 Jan 26;10:51. doi: 10.1186/1471-2164-10-51.

PMID:
19171065
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A phylogenetic analysis of indel dynamics in the cotton genus.

Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF.

Mol Biol Evol. 2008 Jul;25(7):1415-28. doi: 10.1093/molbev/msn085. Epub 2008 Apr 9.

PMID:
18400789
[PubMed - indexed for MEDLINE]
Free Article
12.

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.

Zhang Z, Gerstein M.

Nucleic Acids Res. 2003 Sep 15;31(18):5338-48.

PMID:
12954770
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sequence context affects the rate of short insertions and deletions in flies and primates.

Tanay A, Siggia ED.

Genome Biol. 2008;9(2):R37. doi: 10.1186/gb-2008-9-2-r37. Epub 2008 Feb 21.

PMID:
18291026
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Han K, Sen SK, Wang J, Callinan PA, Lee J, Cordaux R, Liang P, Batzer MA.

Nucleic Acids Res. 2005 Jul 20;33(13):4040-52. Print 2005.

PMID:
16034026
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Patterns and rates of indel evolution in processed pseudogenes from humans and murids.

Ophir R, Graur D.

Gene. 1997 Dec 31;205(1-2):191-202.

PMID:
9461394
[PubMed - indexed for MEDLINE]
16.

A macaque's-eye view of human insertions and deletions: differences in mechanisms.

Kvikstad EM, Tyekucheva S, Chiaromonte F, Makova KD.

PLoS Comput Biol. 2007 Sep;3(9):1772-82. Epub 2007 Jul 27.

PMID:
17941704
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Small insertions and deletions (INDELs) in human genomes.

Mullaney JM, Mills RE, Pittard WS, Devine SE.

Hum Mol Genet. 2010 Oct 15;19(R2):R131-6. doi: 10.1093/hmg/ddq400. Epub 2010 Sep 21. Review.

PMID:
20858594
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.

Taylor MS, Ponting CP, Copley RR.

Genome Res. 2004 Apr;14(4):555-66.

PMID:
15059996
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

Tian D, Wang Q, Zhang P, Araki H, Yang S, Kreitman M, Nagylaki T, Hudson R, Bergelson J, Chen JQ.

Nature. 2008 Sep 4;455(7209):105-8. doi: 10.1038/nature07175. Epub 2008 Jul 20.

PMID:
18641631
[PubMed - indexed for MEDLINE]
20.

Recombination drives vertebrate genome contraction.

Nam K, Ellegren H.

PLoS Genet. 2012;8(5):e1002680. doi: 10.1371/journal.pgen.1002680. Epub 2012 May 3.

PMID:
22570634
[PubMed - indexed for MEDLINE]
Free PMC Article

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