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Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals.

Xiao S, Zhang JY, Zheng KW, Hao YH, Tan Z.

Nucleic Acids Res. 2013 Dec;41(22):10379-90. doi: 10.1093/nar/gkt781. Epub 2013 Sep 2.


Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control.

Zheng KW, Xiao S, Liu JQ, Zhang JY, Hao YH, Tan Z.

Nucleic Acids Res. 2013 May 1;41(10):5533-41. doi: 10.1093/nar/gkt264. Epub 2013 Apr 12.


Mechanism and manipulation of DNA:RNA hybrid G-quadruplex formation in transcription of G-rich DNA.

Zhang JY, Zheng KW, Xiao S, Hao YH, Tan Z.

J Am Chem Soc. 2014 Jan 29;136(4):1381-90. doi: 10.1021/ja4085572. Epub 2014 Jan 17.


A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site.

Zheng KW, Wu RY, He YD, Xiao S, Zhang JY, Liu JQ, Hao YH, Tan Z.

Nucleic Acids Res. 2014;42(16):10832-44. doi: 10.1093/nar/gku764. Epub 2014 Aug 19. Erratum in: Nucleic Acids Res. 2014 Nov 10;42(20):12960.


Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes.

Eddy J, Maizels N.

Nucleic Acids Res. 2008 Mar;36(4):1321-33. doi: 10.1093/nar/gkm1138. Epub 2008 Jan 10.


Nascent RNA transcripts facilitate the formation of G-quadruplexes.

Shrestha P, Xiao S, Dhakal S, Tan Z, Mao H.

Nucleic Acids Res. 2014 Jun;42(11):7236-46. doi: 10.1093/nar/gku416. Epub 2014 May 14.


Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes.

Smargiasso N, Gabelica V, Damblon C, Rosu F, De Pauw E, Teulade-Fichou MP, Rowe JA, Claessens A.

BMC Genomics. 2009 Aug 6;10:362. doi: 10.1186/1471-2164-10-362.


Formation of DNA:RNA hybrid G-quadruplex in bacterial cells and its dominance over the intramolecular DNA G-quadruplex in mediating transcription termination.

Wu RY, Zheng KW, Zhang JY, Hao YH, Tan Z.

Angew Chem Int Ed Engl. 2015 Feb 16;54(8):2447-51. doi: 10.1002/anie.201408719. Epub 2015 Jan 22.


Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription.

Du Z, Zhao Y, Li N.

Genome Res. 2008 Feb;18(2):233-41. Epub 2007 Dec 20. Erratum in: Genome Res. 2008 Mar;18(3):516.


Strand-Biased Formation of G-Quadruplexes in DNA Duplexes Transcribed with T7 RNA Polymerase.

Liu JQ, Xiao S, Hao YH, Tan Z.

Angew Chem Int Ed Engl. 2015 Jul 27;54(31):8992-6. doi: 10.1002/anie.201503648. Epub 2015 Jun 12.


DNA G-quadruplex formation in response to remote downstream transcription activity: long-range sensing and signal transducing in DNA double helix.

Zhang C, Liu HH, Zheng KW, Hao YH, Tan Z.

Nucleic Acids Res. 2013 Aug;41(14):7144-52. doi: 10.1093/nar/gkt443. Epub 2013 May 28.


A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.

Wanrooij PH, Uhler JP, Shi Y, Westerlund F, Falkenberg M, Gustafsson CM.

Nucleic Acids Res. 2012 Nov 1;40(20):10334-44. doi: 10.1093/nar/gks802. Epub 2012 Sep 10.


Direct visualization of G-quadruplexes in DNA using atomic force microscopy.

Neaves KJ, Huppert JL, Henderson RM, Edwardson JM.

Nucleic Acids Res. 2009 Oct;37(18):6269-75. doi: 10.1093/nar/gkp679. Epub 2009 Aug 20.


Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential.

Cao K, Ryvkin P, Johnson FB.

Methods. 2012 May;57(1):3-10. doi: 10.1016/j.ymeth.2012.05.002. Epub 2012 May 29.


G-quadruplexes in promoters throughout the human genome.

Huppert JL, Balasubramanian S.

Nucleic Acids Res. 2007;35(2):406-13. Epub 2006 Dec 14. Erratum in: Nucleic Acids Res. 2007;35(6):2105.


Relationships between putative G-quadruplex-forming sequences, RecQ helicases, and transcription.

Smestad JA, Maher LJ 3rd.

BMC Med Genet. 2015 Oct 8;16:91. doi: 10.1186/s12881-015-0236-4.


QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs.

Frees S, Menendez C, Crum M, Bagga PS.

Hum Genomics. 2014 May 1;8:8. doi: 10.1186/1479-7364-8-8.

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