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Results: 1 to 20 of 229

1.

Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data.

Lv J, Cui W, Liu H, He H, Xiu Y, Guo J, Liu H, Liu Q, Zeng T, Chen Y, Zhang Y, Wu Q.

PLoS One. 2013 Aug 14;8(8):e71152. doi: 10.1371/journal.pone.0071152. eCollection 2013.

PMID:
23967161
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

PMID:
22110045
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Chew GL, Pauli A, Rinn JL, Regev A, Schier AF, Valen E.

Development. 2013 Jul;140(13):2828-34. doi: 10.1242/dev.098343. Epub 2013 May 22.

PMID:
23698349
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features.

Lv J, Liu H, Huang Z, Su J, He H, Xiu Y, Zhang Y, Wu Q.

Nucleic Acids Res. 2013 Dec;41(22):10044-61. doi: 10.1093/nar/gkt818. Epub 2013 Sep 13.

PMID:
24038472
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Long non-coding RNA expression profiling of mouse testis during postnatal development.

Sun J, Lin Y, Wu J.

PLoS One. 2013 Oct 10;8(10):e75750. doi: 10.1371/journal.pone.0075750. eCollection 2013.

PMID:
24130740
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.

Wu P, Zuo X, Deng H, Liu X, Liu L, Ji A.

Brain Res Bull. 2013 Aug;97:69-80. doi: 10.1016/j.brainresbull.2013.06.001. Epub 2013 Jun 10. Review.

PMID:
23756188
[PubMed - indexed for MEDLINE]
7.

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.

Basu S, Müller F, Sanges R.

BMC Bioinformatics. 2013;14 Suppl 7:S14. doi: 10.1186/1471-2105-14-S7-S14. Epub 2013 Apr 22.

PMID:
23815359
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide identification and functional annotation of Plasmodium falciparum long noncoding RNAs from RNA-seq data.

Liao Q, Shen J, Liu J, Sun X, Zhao G, Chang Y, Xu L, Li X, Zhao Y, Zheng H, Zhao Y, Wu Z.

Parasitol Res. 2014 Apr;113(4):1269-81. doi: 10.1007/s00436-014-3765-4. Epub 2014 Feb 13.

PMID:
24522451
[PubMed - indexed for MEDLINE]
9.

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.

Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H.

BMC Bioinformatics. 2012 Dec 13;13:331. doi: 10.1186/1471-2105-13-331.

PMID:
23237380
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Predicting long non-coding RNAs using RNA sequencing.

Ilott NE, Ponting CP.

Methods. 2013 Sep 1;63(1):50-9. doi: 10.1016/j.ymeth.2013.03.019. Epub 2013 Mar 27. Review.

PMID:
23541739
[PubMed - indexed for MEDLINE]
11.

Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.

Aprea J, Prenninger S, Dori M, Ghosh T, Monasor LS, Wessendorf E, Zocher S, Massalini S, Alexopoulou D, Lesche M, Dahl A, Groszer M, Hiller M, Calegari F.

EMBO J. 2013 Dec 11;32(24):3145-60. doi: 10.1038/emboj.2013.245. Epub 2013 Nov 15.

PMID:
24240175
[PubMed - indexed for MEDLINE]
Free Article
12.

Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations.

Fachel AA, Tahira AC, Vilella-Arias SA, Maracaja-Coutinho V, Gimba ER, Vignal GM, Campos FS, Reis EM, Verjovski-Almeida S.

Mol Cancer. 2013 Nov 15;12(1):140. doi: 10.1186/1476-4598-12-140.

PMID:
24238219
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

Jalali S, Bhartiya D, Lalwani MK, Sivasubbu S, Scaria V.

PLoS One. 2013;8(2):e53823. doi: 10.1371/journal.pone.0053823. Epub 2013 Feb 6.

PMID:
23405074
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes.

Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP.

Genome Biol. 2010;11(7):R72. doi: 10.1186/gb-2010-11-7-r72. Epub 2010 Jul 12.

PMID:
20624288
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development.

Paranjpe SS, Jacobi UG, van Heeringen SJ, Veenstra GJ.

BMC Genomics. 2013 Nov 6;14:762. doi: 10.1186/1471-2164-14-762.

PMID:
24195446
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide discovery and characterization of maize long non-coding RNAs.

Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

Genome Biol. 2014 Feb 27;15(2):R40. [Epub ahead of print]

PMID:
24576388
[PubMed - as supplied by publisher]
Free PMC Article
17.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

PMID:
22955988
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evolutionary conservation of long non-coding RNAs; sequence, structure, function.

Johnsson P, Lipovich L, Grandér D, Morris KV.

Biochim Biophys Acta. 2014 Mar;1840(3):1063-71. doi: 10.1016/j.bbagen.2013.10.035. Epub 2013 Oct 27. Review.

PMID:
24184936
[PubMed - indexed for MEDLINE]
19.

Long noncoding RNA in genome regulation: prospects and mechanisms.

Hung T, Chang HY.

RNA Biol. 2010 Sep-Oct;7(5):582-5. Epub 2010 Sep 1.

PMID:
20930520
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect.

Song G, Shen Y, Zhu J, Liu H, Liu M, Shen YQ, Zhu S, Kong X, Yu Z, Qian L.

PLoS One. 2013 Oct 16;8(10):e77492. doi: 10.1371/journal.pone.0077492. eCollection 2013.

PMID:
24147006
[PubMed - indexed for MEDLINE]
Free PMC Article

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