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Items: 1 to 20 of 110

1.

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria.

Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F.

Sci Rep. 2013;3:2471. doi: 10.1038/srep02471.

2.

Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics.

Mizuno CM, Rodriguez-Valera F, Ghai R.

MBio. 2015 Feb 10;6(1). pii: e02083-14. doi: 10.1128/mBio.02083-14.

3.

Genome sequence of "Candidatus Aquiluna" sp. strain IMCC13023, a marine member of the Actinobacteria isolated from an arctic fjord.

Kang I, Lee K, Yang SJ, Choi A, Kang D, Lee YK, Cho JC.

J Bacteriol. 2012 Jul;194(13):3550-1. doi: 10.1128/JB.00586-12.

4.

New abundant microbial groups in aquatic hypersaline environments.

Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F.

Sci Rep. 2011;1:135. doi: 10.1038/srep00135. Epub 2011 Oct 31.

5.

A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum.

Martin-Cuadrado AB, Garcia-Heredia I, Moltó AG, López-Úbeda R, Kimes N, López-García P, Moreira D, Rodriguez-Valera F.

ISME J. 2015 Jul;9(7):1619-34. doi: 10.1038/ismej.2014.249. Epub 2014 Dec 23.

PMID:
25535935
6.

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing.

Ghai R, Martin-Cuadrado AB, Molto AG, Heredia IG, Cabrera R, Martin J, Verdú M, Deschamps P, Moreira D, López-García P, Mira A, Rodriguez-Valera F.

ISME J. 2010 Sep;4(9):1154-66. doi: 10.1038/ismej.2010.44. Epub 2010 Apr 15.

PMID:
20393571
7.

Expanding the marine virosphere using metagenomics.

Mizuno CM, Rodriguez-Valera F, Kimes NE, Ghai R.

PLoS Genet. 2013;9(12):e1003987. doi: 10.1371/journal.pgen.1003987. Epub 2013 Dec 12.

8.

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'.

Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR.

BMC Genomics. 2009 Jun 16;10:268. doi: 10.1186/1471-2164-10-268.

9.

A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome.

Gilbert JA, Mühling M, Joint I.

ISME J. 2008 Jul;2(7):790-3. doi: 10.1038/ismej.2008.49. Epub 2008 May 22.

PMID:
18496576
10.

Key roles for freshwater Actinobacteria revealed by deep metagenomic sequencing.

Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F.

Mol Ecol. 2014 Dec;23(24):6073-90. doi: 10.1111/mec.12985. Epub 2014 Nov 21.

PMID:
25355242
11.

Applying Shannon's information theory to bacterial and phage genomes and metagenomes.

Akhter S, Bailey BA, Salamon P, Aziz RK, Edwards RA.

Sci Rep. 2013;3:1033. doi: 10.1038/srep01033. Epub 2013 Jan 8.

12.

Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids.

Mizuno CM, Rodriguez-Valera F, Garcia-Heredia I, Martin-Cuadrado AB, Ghai R.

Appl Environ Microbiol. 2013 Jan;79(2):688-95. doi: 10.1128/AEM.02742-12. Epub 2012 Nov 16.

13.

Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes.

Tai V, Poon AF, Paulsen IT, Palenik B.

PLoS One. 2011;6(9):e24249. doi: 10.1371/journal.pone.0024249. Epub 2011 Sep 9.

14.

Virtual metagenome reconstruction from 16S rRNA gene sequences.

Okuda S, Tsuchiya Y, Kiriyama C, Itoh M, Morisaki H.

Nat Commun. 2012;3:1203. doi: 10.1038/ncomms2203.

PMID:
23149747
15.

Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data.

Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ.

Biol Direct. 2007 Nov 7;2:27.

16.

Exploration of community traits as ecological markers in microbial metagenomes.

Barberán A, Fernández-Guerra A, Bohannan BJ, Casamayor EO.

Mol Ecol. 2012 Apr;21(8):1909-17. doi: 10.1111/j.1365-294X.2011.05383.x. Epub 2011 Nov 28.

PMID:
22121910
17.

Beyond the bounds of orthology: functional inference from metagenomic context.

Vey G, Moreno-Hagelsieb G.

Mol Biosyst. 2010 Jul;6(7):1247-54. doi: 10.1039/b919263h. Epub 2010 Apr 23.

PMID:
20419183
18.

Genome streamlining in a cosmopolitan oceanic bacterium.

Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappé MS, Short JM, Carrington JC, Mathur EJ.

Science. 2005 Aug 19;309(5738):1242-5.

19.

Construction of small-insert and large-insert metagenomic libraries.

Simon C, Daniel R.

Methods Mol Biol. 2010;668:39-50. doi: 10.1007/978-1-60761-823-2_2.

PMID:
20830554
20.

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.

Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC.

ISME J. 2012 Jun;6(6):1186-99. doi: 10.1038/ismej.2011.189. Epub 2011 Dec 15.

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