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Results: 1 to 20 of 119

Similar articles for PubMed (Select 23951152)

1.

Structural dynamics of human telomeric G-quadruplex loops studied by molecular dynamics simulations.

Zhu H, Xiao S, Liang H.

PLoS One. 2013 Aug 8;8(8):e71380. doi: 10.1371/journal.pone.0071380. eCollection 2013.

2.

Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers.

Lim KW, Amrane S, Bouaziz S, Xu W, Mu Y, Patel DJ, Luu KN, Phan AT.

J Am Chem Soc. 2009 Apr 1;131(12):4301-9. doi: 10.1021/ja807503g.

4.

Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes.

Parkinson GN, Cuenca F, Neidle S.

J Mol Biol. 2008 Sep 19;381(5):1145-56. doi: 10.1016/j.jmb.2008.06.022. Epub 2008 Jun 17.

PMID:
18619463
5.

Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale.

Islam B, Sgobba M, Laughton C, Orozco M, Sponer J, Neidle S, Haider S.

Nucleic Acids Res. 2013 Feb 1;41(4):2723-35. doi: 10.1093/nar/gks1331. Epub 2013 Jan 4.

6.

Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.

Dai J, Punchihewa C, Ambrus A, Chen D, Jones RA, Yang D.

Nucleic Acids Res. 2007;35(7):2440-50. Epub 2007 Mar 29.

7.

Structure of long human telomeric RNA (TERRA): G-quadruplexes formed by four and eight UUAGGG repeats are stable building blocks.

Martadinata H, Heddi B, Lim KW, Phan AT.

Biochemistry. 2011 Jul 26;50(29):6455-61. doi: 10.1021/bi200569f. Epub 2011 Jun 30.

PMID:
21671673
8.

The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.

Crnugelj M, Hud NV, Plavec J.

J Mol Biol. 2002 Jul 26;320(5):911-24.

PMID:
12126614
9.

Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations.

Stadlbauer P, Trantírek L, Cheatham TE 3rd, Koča J, Sponer J.

Biochimie. 2014 Oct;105:22-35. doi: 10.1016/j.biochi.2014.07.009. Epub 2014 Jul 17.

10.

Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis.

Cang X, Šponer J, Cheatham TE 3rd.

J Am Chem Soc. 2011 Sep 14;133(36):14270-9. doi: 10.1021/ja107805r. Epub 2011 Aug 19.

11.

Folding pathways of human telomeric type-1 and type-2 G-quadruplex structures.

Mashimo T, Yagi H, Sannohe Y, Rajendran A, Sugiyama H.

J Am Chem Soc. 2010 Oct 27;132(42):14910-8. doi: 10.1021/ja105806u.

PMID:
20882978
12.

Conformation and stability of intramolecular telomeric G-quadruplexes: sequence effects in the loops.

Sattin G, Artese A, Nadai M, Costa G, Parrotta L, Alcaro S, Palumbo M, Richter SN.

PLoS One. 2013 Dec 18;8(12):e84113. doi: 10.1371/journal.pone.0084113. eCollection 2013.

13.

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.

Ambrus A, Chen D, Dai J, Bialis T, Jones RA, Yang D.

Nucleic Acids Res. 2006 May 19;34(9):2723-35. Print 2006.

14.

New insights into the structures of ligand-quadruplex complexes from molecular dynamics simulations.

Hou JQ, Chen SB, Tan JH, Ou TM, Luo HB, Li D, Xu J, Gu LQ, Huang ZS.

J Phys Chem B. 2010 Nov 25;114(46):15301-10. doi: 10.1021/jp106683n. Epub 2010 Nov 4.

PMID:
21049896
15.

Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution.

Phan AT, Luu KN, Patel DJ.

Nucleic Acids Res. 2006;34(19):5715-9. Epub 2006 Oct 12.

16.

Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.

Phan AT, Kuryavyi V, Luu KN, Patel DJ.

Nucleic Acids Res. 2007;35(19):6517-25. Epub 2007 Sep 25.

17.

Structural diversity and extreme stability of unimolecular Oxytricha nova telomeric G-quadruplex.

Lee JY, Yoon J, Kihm HW, Kim DS.

Biochemistry. 2008 Mar 18;47(11):3389-96. doi: 10.1021/bi702013d. Epub 2008 Feb 26.

PMID:
18298084
18.

Molecular dynamics simulations to provide new insights into the asymmetrical ammonium ion movement inside of the [d(G3T4G4)]2 G-quadruplex DNA structure.

Akhshi P, Acton G, Wu G.

J Phys Chem B. 2012 Aug 9;116(31):9363-70. doi: 10.1021/jp304760k. Epub 2012 Jul 25.

PMID:
22780684
19.

Structure of a G-quadruplex-ligand complex.

Haider SM, Parkinson GN, Neidle S.

J Mol Biol. 2003 Feb 7;326(1):117-25.

PMID:
12547195
20.

Molecular dynamics and principal components analysis of human telomeric quadruplex multimers.

Haider S, Parkinson GN, Neidle S.

Biophys J. 2008 Jul;95(1):296-311. doi: 10.1529/biophysj.107.120501. Epub 2008 Mar 28.

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