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Results: 1 to 20 of 85

1.

Molecular dynamics simulations of mechanical failure in polymorphic arrangements of amyloid fibrils containing structural defects.

Ndlovu H, Ashcroft AE, Radford SE, Harris SA.

Beilstein J Nanotechnol. 2013 Jul 4;4:429-40. doi: 10.3762/bjnano.4.50. eCollection 2013.

PMID:
23946911
[PubMed]
Free PMC Article
2.

Effect of sequence variation on the mechanical response of amyloid fibrils probed by steered molecular dynamics simulation.

Ndlovu H, Ashcroft AE, Radford SE, Harris SA.

Biophys J. 2012 Feb 8;102(3):587-96. doi: 10.1016/j.bpj.2011.12.047. Epub 2012 Feb 7.

PMID:
22325282
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Systematic examination of polymorphism in amyloid fibrils by molecular-dynamics simulation.

Berryman JT, Radford SE, Harris SA.

Biophys J. 2011 May 4;100(9):2234-42. doi: 10.1016/j.bpj.2011.02.060.

PMID:
21539792
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Nanomechanical properties of single amyloid fibrils.

Sweers KK, Bennink ML, Subramaniam V.

J Phys Condens Matter. 2012 Jun 20;24(24):243101. doi: 10.1088/0953-8984/24/24/243101. Epub 2012 May 15. Review.

PMID:
22585542
[PubMed - indexed for MEDLINE]
5.

The mechanical response of hIAPP nanowires based on different bending direction simulations.

Kim JI, Lee M, Baek I, Yoon G, Na S.

Phys Chem Chem Phys. 2014 Aug 6;16(34):18493-500. doi: 10.1039/c4cp02494j.

PMID:
25073067
[PubMed - in process]
6.

Role of water in protein aggregation and amyloid polymorphism.

Thirumalai D, Reddy G, Straub JE.

Acc Chem Res. 2012 Jan 17;45(1):83-92. doi: 10.1021/ar2000869. Epub 2011 Jul 15.

PMID:
21761818
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Heterogeneous triangular structures of human islet amyloid polypeptide (amylin) with internal hydrophobic cavity and external wrapping morphology reveal the polymorphic nature of amyloid fibrils.

Zhao J, Yu X, Liang G, Zheng J.

Biomacromolecules. 2011 May 9;12(5):1781-94. doi: 10.1021/bm2001507. Epub 2011 Apr 5.

PMID:
21428404
[PubMed - indexed for MEDLINE]
8.

Alternative packing modes leading to amyloid polymorphism in five fragments studied with molecular dynamics.

Berhanu WM, Masunov AE.

Biopolymers. 2012;98(2):131-44. doi: 10.1002/bip.21731. Epub 2011 Oct 23.

PMID:
22020870
[PubMed - indexed for MEDLINE]
9.

Mechanical unbinding of abeta peptides from amyloid fibrils.

Raman EP, Takeda T, Barsegov V, Klimov DK.

J Mol Biol. 2007 Oct 26;373(3):785-800. Epub 2007 Aug 22.

PMID:
17868685
[PubMed - indexed for MEDLINE]
10.

Molecular dynamics simulation study on the molecular structures of the amylin fibril models.

Xu W, Su H, Zhang JZ, Mu Y.

J Phys Chem B. 2012 Dec 6;116(48):13991-9. doi: 10.1021/jp308708h. Epub 2012 Nov 26.

PMID:
23145779
[PubMed - indexed for MEDLINE]
11.

A structural model for apolipoprotein C-II amyloid fibrils: experimental characterization and molecular dynamics simulations.

Teoh CL, Pham CL, Todorova N, Hung A, Lincoln CN, Lees E, Lam YH, Binger KJ, Thomson NH, Radford SE, Smith TA, Müller SA, Engel A, Griffin MD, Yarovsky I, Gooley PR, Howlett GJ.

J Mol Biol. 2011 Feb 4;405(5):1246-66. doi: 10.1016/j.jmb.2010.12.006. Epub 2010 Dec 10.

PMID:
21146539
[PubMed - indexed for MEDLINE]
12.

Steric zipper of the amyloid fibrils formed by residues 109-122 of the Syrian hamster prion protein.

Lee SW, Mou Y, Lin SY, Chou FC, Tseng WH, Chen CH, Lu CY, Yu SS, Chan JC.

J Mol Biol. 2008 May 16;378(5):1142-54. doi: 10.1016/j.jmb.2008.03.035. Epub 2008 Mar 26.

PMID:
18423487
[PubMed - indexed for MEDLINE]
13.

Structural complexity of a composite amyloid fibril.

Lewandowski JR, van der Wel PC, Rigney M, Grigorieff N, Griffin RG.

J Am Chem Soc. 2011 Sep 21;133(37):14686-98. doi: 10.1021/ja203736z. Epub 2011 Aug 23.

PMID:
21766841
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Self-folding and aggregation of amyloid nanofibrils.

Paparcone R, Cranford SW, Buehler MJ.

Nanoscale. 2011 Apr;3(4):1748-55. doi: 10.1039/c0nr00840k. Epub 2011 Feb 23.

PMID:
21347488
[PubMed - indexed for MEDLINE]
15.

Failure of Aβ(1-40) amyloid fibrils under tensile loading.

Paparcone R, Buehler MJ.

Biomaterials. 2011 May;32(13):3367-74. doi: 10.1016/j.biomaterials.2010.11.066.

PMID:
21303720
[PubMed - indexed for MEDLINE]
16.

Polymorphic structures of Alzheimer's β-amyloid globulomers.

Yu X, Zheng J.

PLoS One. 2011;6(6):e20575. doi: 10.1371/journal.pone.0020575. Epub 2011 Jun 7.

PMID:
21687730
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Structure and intermolecular dynamics of aggregates populated during amyloid fibril formation studied by hydrogen/deuterium exchange.

Carulla N, Zhou M, Giralt E, Robinson CV, Dobson CM.

Acc Chem Res. 2010 Aug 17;43(8):1072-9. doi: 10.1021/ar9002784.

PMID:
20557067
[PubMed - indexed for MEDLINE]
18.

Atomic models of de novo designed cc beta-Met amyloid-like fibrils.

Steinmetz MO, Gattin Z, Verel R, Ciani B, Stromer T, Green JM, Tittmann P, Schulze-Briese C, Gross H, van Gunsteren WF, Meier BH, Serpell LC, Müller SA, Kammerer RA.

J Mol Biol. 2008 Feb 22;376(3):898-912. doi: 10.1016/j.jmb.2007.11.100. Epub 2007 Dec 5.

PMID:
18178219
[PubMed - indexed for MEDLINE]
19.

Mechanical manipulation of Alzheimer's amyloid beta1-42 fibrils.

Karsai A, Mártonfalvi Z, Nagy A, Grama L, Penke B, Kellermayer MS.

J Struct Biol. 2006 Aug;155(2):316-26. Epub 2006 May 2.

PMID:
16713296
[PubMed - indexed for MEDLINE]
20.

Structural and mechanical properties of TTR105-115 amyloid fibrils from compression experiments.

Meersman F, Cabrera RQ, McMillan PF, Dmitriev V.

Biophys J. 2011 Jan 5;100(1):193-7. doi: 10.1016/j.bpj.2010.11.052.

PMID:
21190671
[PubMed - indexed for MEDLINE]
Free PMC Article

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