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Results: 1 to 20 of 76

1.

Bursting with randomness: a simple model for stochastic control of gene expression.

Robinson R.

PLoS Biol. 2013;11(8):e1001622. doi: 10.1371/journal.pbio.1001622. Epub 2013 Aug 6. No abstract available.

PMID:
23940459
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Linking stochastic fluctuations in chromatin structure and gene expression.

Brown CR, Mao C, Falkovskaia E, Jurica MS, Boeger H.

PLoS Biol. 2013;11(8):e1001621. doi: 10.1371/journal.pbio.1001621. Epub 2013 Aug 6.

PMID:
23940458
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts.

Viñuelas J, Kaneko G, Coulon A, Vallin E, Morin V, Mejia-Pous C, Kupiec JJ, Beslon G, Gandrillon O.

BMC Biol. 2013 Feb 25;11:15. doi: 10.1186/1741-7007-11-15.

PMID:
23442824
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Postmodern biology: (adult) (stem) cells are plastic, stochastic, complex, and uncertain.

Theise ND, Harris R.

Handb Exp Pharmacol. 2006;(174):389-408. Review.

PMID:
16370336
[PubMed - indexed for MEDLINE]
5.

Chromatin remodeling in silico: a stochastic model for SWI/SNF.

Mazloom AR, Basu K, Mandal SS, Das SK.

Biosystems. 2010 Mar;99(3):179-91. doi: 10.1016/j.biosystems.2009.11.001. Epub 2009 Nov 27.

PMID:
19945504
[PubMed - indexed for MEDLINE]
6.

Stochastic choice of allelic expression in human neural stem cells.

Jeffries AR, Perfect LW, Ledderose J, Schalkwyk LC, Bray NJ, Mill J, Price J.

Stem Cells. 2012 Sep;30(9):1938-47. doi: 10.1002/stem.1155.

PMID:
22714879
[PubMed - indexed for MEDLINE]
Free Article
7.

Chromatin profiling in model organisms.

Southall TD, Brand AH.

Brief Funct Genomic Proteomic. 2007 Jun;6(2):133-40. Epub 2007 Jul 24. Review.

PMID:
17652104
[PubMed - indexed for MEDLINE]
Free Article
8.

Short-term memory in gene induction reveals the regulatory principle behind stochastic IL-4 expression.

Mariani L, Schulz EG, Lexberg MH, Helmstetter C, Radbruch A, Löhning M, Höfer T.

Mol Syst Biol. 2010 Apr 13;6:359. doi: 10.1038/msb.2010.13.

PMID:
20393579
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Controlling transcriptional programs for cellular adaptation by chromatin regulation.

Kim SC, Choi JK.

Mol Biosyst. 2011 May;7(5):1713-9. doi: 10.1039/c0mb00319k. Epub 2011 Mar 17.

PMID:
21412562
[PubMed - indexed for MEDLINE]
10.

Stochastic gene expression during cell differentiation: order from disorder?

Paldi A.

Cell Mol Life Sci. 2003 Sep;60(9):1775-8. Review. No abstract available.

PMID:
14523542
[PubMed - indexed for MEDLINE]
11.

Histone H3 acetylation and H3 K4 methylation define distinct chromatin regions permissive for transgene expression.

Yan C, Boyd DD.

Mol Cell Biol. 2006 Sep;26(17):6357-71.

PMID:
16914722
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Effects of molecular memory and bursting on fluctuations in gene expression.

Pedraza JM, Paulsson J.

Science. 2008 Jan 18;319(5861):339-43. doi: 10.1126/science.1144331.

PMID:
18202292
[PubMed - indexed for MEDLINE]
Free Article
13.

The complex language of chromatin regulation during transcription.

Berger SL.

Nature. 2007 May 24;447(7143):407-12. Review.

PMID:
17522673
[PubMed - indexed for MEDLINE]
14.

Role of chromatin modification in flowering-time control.

He Y, Amasino RM.

Trends Plant Sci. 2005 Jan;10(1):30-5. Review.

PMID:
15642521
[PubMed - indexed for MEDLINE]
15.

Intrinsic noise in stochastic models of gene expression with molecular memory and bursting.

Jia T, Kulkarni RV.

Phys Rev Lett. 2011 Feb 4;106(5):058102. Epub 2011 Feb 2.

PMID:
21405439
[PubMed - indexed for MEDLINE]
16.

Thermodynamic models of combinatorial gene regulation by distant enhancers.

Narula J, Igoshin OA.

IET Syst Biol. 2010 Nov;4(6):393-408. doi: 10.1049/iet-syb.2010.0010.

PMID:
21073238
[PubMed - indexed for MEDLINE]
17.

Applications of Little's Law to stochastic models of gene expression.

Elgart V, Jia T, Kulkarni RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Aug;82(2 Pt 1):021901. Epub 2010 Aug 3.

PMID:
20866831
[PubMed - indexed for MEDLINE]
18.

Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis.

Ono T, Kaya H, Takeda S, Abe M, Ogawa Y, Kato M, Kakutani T, Mittelsten Scheid O, Araki T, Shibahara K.

Genes Cells. 2006 Feb;11(2):153-62.

PMID:
16436052
[PubMed - indexed for MEDLINE]
19.

Chromatin looping and the probability of transcription.

Li Q, Barkess G, Qian H.

Trends Genet. 2006 Apr;22(4):197-202. Epub 2006 Feb 21. Review.

PMID:
16494964
[PubMed - indexed for MEDLINE]
20.

Chromosome structure and nuclear architecture: implications for gene therapy.

Jackson DA.

Curr Opin Mol Ther. 2002 Aug;4(4):290-8. Review.

PMID:
12222866
[PubMed - indexed for MEDLINE]

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