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Heterochromatic gene silencing by activator interference and a transcription elongation barrier.

Johnson A, Wu R, Peetz M, Gygi SP, Moazed D.

J Biol Chem. 2013 Oct 4;288(40):28771-82. doi: 10.1074/jbc.M113.460071. Epub 2013 Aug 12.


Reconstitution of heterochromatin-dependent transcriptional gene silencing.

Johnson A, Li G, Sikorski TW, Buratowski S, Woodcock CL, Moazed D.

Mol Cell. 2009 Sep 24;35(6):769-81. doi: 10.1016/j.molcel.2009.07.030.


Sir2 silences gene transcription by targeting the transition between RNA polymerase II initiation and elongation.

Gao L, Gross DS.

Mol Cell Biol. 2008 Jun;28(12):3979-94. doi: 10.1128/MCB.00019-08. Epub 2008 Apr 7.


A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin.

Rudner AD, Hall BE, Ellenberger T, Moazed D.

Mol Cell Biol. 2005 Jun;25(11):4514-28.


A region of the nucleosome required for multiple types of transcriptional silencing in Saccharomyces cerevisiae.

Prescott ET, Safi A, Rusche LN.

Genetics. 2011 Jul;188(3):535-48. doi: 10.1534/genetics.111.129197. Epub 2011 May 5.


Acetylation of H3 K56 is required for RNA polymerase II transcript elongation through heterochromatin in yeast.

Värv S, Kristjuhan K, Peil K, Lõoke M, Mahlakõiv T, Paapsi K, Kristjuhan A.

Mol Cell Biol. 2010 Mar;30(6):1467-77. doi: 10.1128/MCB.01151-09. Epub 2010 Jan 11.


The C-terminus of histone H2B is involved in chromatin compaction specifically at telomeres, independently of its monoubiquitylation at lysine 123.

Wang CY, Hua CY, Hsu HE, Hsu CL, Tseng HY, Wright DE, Hsu PH, Jen CH, Lin CY, Wu MY, Tsai MD, Kao CF.

PLoS One. 2011;6(7):e22209. doi: 10.1371/journal.pone.0022209. Epub 2011 Jul 29.


Using genomics and proteomics to investigate mechanisms of transcriptional silencing in Saccharomyces cerevisiae.

Gao L, Gross DS.

Brief Funct Genomic Proteomic. 2006 Dec;5(4):280-8. Epub 2006 Nov 2. Review.


Sir3-nucleosome interactions in spreading of silent chromatin in Saccharomyces cerevisiae.

Buchberger JR, Onishi M, Li G, Seebacher J, Rudner AD, Gygi SP, Moazed D.

Mol Cell Biol. 2008 Nov;28(22):6903-18. doi: 10.1128/MCB.01210-08. Epub 2008 Sep 15.


Modulation of life-span by histone deacetylase genes in Saccharomyces cerevisiae.

Kim S, Benguria A, Lai CY, Jazwinski SM.

Mol Biol Cell. 1999 Oct;10(10):3125-36.


A model for step-wise assembly of heterochromatin in yeast.

Moazed D, Rudner AD, Huang J, Hoppe GJ, Tanny JC.

Novartis Found Symp. 2004;259:48-56; discussion 56-62, 163-9. Review.


SIR-nucleosome interactions: structure-function relationships in yeast silent chromatin.

Oppikofer M, Kueng S, Gasser SM.

Gene. 2013 Sep 15;527(1):10-25. doi: 10.1016/j.gene.2013.05.088. Epub 2013 Jun 18. Review.


Dimerization of Sir3 via its C-terminal winged helix domain is essential for yeast heterochromatin formation.

Oppikofer M, Kueng S, Keusch JJ, Hassler M, Ladurner AG, Gut H, Gasser SM.

EMBO J. 2013 Feb 6;32(3):437-49. doi: 10.1038/emboj.2012.343. Epub 2013 Jan 8.


SIR proteins and the assembly of silent chromatin in budding yeast.

Kueng S, Oppikofer M, Gasser SM.

Annu Rev Genet. 2013;47:275-306. doi: 10.1146/annurev-genet-021313-173730. Epub 2013 Sep 4. Review.


Limiting the extent of the RDN1 heterochromatin domain by a silencing barrier and Sir2 protein levels in Saccharomyces cerevisiae.

Biswas M, Maqani N, Rai R, Kumaran SP, Iyer KR, Sendinc E, Smith JS, Laloraya S.

Mol Cell Biol. 2009 May;29(10):2889-98. doi: 10.1128/MCB.00728-08. Epub 2009 Mar 16.


Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation.

Hoppe GJ, Tanny JC, Rudner AD, Gerber SA, Danaie S, Gygi SP, Moazed D.

Mol Cell Biol. 2002 Jun;22(12):4167-80.


Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.

Vasiljeva L, Kim M, Terzi N, Soares LM, Buratowski S.

Mol Cell. 2008 Feb 15;29(3):313-23. doi: 10.1016/j.molcel.2008.01.011.


Yeast silent mating type loci form heterochromatic clusters through silencer protein-dependent long-range interactions.

Miele A, Bystricky K, Dekker J.

PLoS Genet. 2009 May;5(5):e1000478. doi: 10.1371/journal.pgen.1000478. Epub 2009 May 8.


Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro.

Martino F, Kueng S, Robinson P, Tsai-Pflugfelder M, van Leeuwen F, Ziegler M, Cubizolles F, Cockell MM, Rhodes D, Gasser SM.

Mol Cell. 2009 Feb 13;33(3):323-34. doi: 10.1016/j.molcel.2009.01.009.

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