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Results: 1 to 20 of 90

1.

Mapping the human reference genome's missing sequence by three-way admixture in Latino genomes.

Genovese G, Handsaker RE, Li H, Kenny EE, McCarroll SA.

Am J Hum Genet. 2013 Sep 5;93(3):411-21. doi: 10.1016/j.ajhg.2013.07.002. Epub 2013 Aug 8.

PMID:
23932108
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Using population admixture to help complete maps of the human genome.

Genovese G, Handsaker RE, Li H, Altemose N, Lindgren AM, Chambert K, Pasaniuc B, Price AL, Reich D, Morton CC, Pollak MR, Wilson JG, McCarroll SA.

Nat Genet. 2013 Apr;45(4):406-14, 414e1-2. doi: 10.1038/ng.2565. Epub 2013 Feb 24.

PMID:
23435088
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A genomewide admixture mapping panel for Hispanic/Latino populations.

Mao X, Bigham AW, Mei R, Gutierrez G, Weiss KM, Brutsaert TD, Leon-Velarde F, Moore LG, Vargas E, McKeigue PM, Shriver MD, Parra EJ.

Am J Hum Genet. 2007 Jun;80(6):1171-8. Epub 2007 Apr 20.

PMID:
17503334
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations.

Smith MW, Lautenberger JA, Shin HD, Chretien JP, Shrestha S, Gilbert DA, O'Brien SJ.

Am J Hum Genet. 2001 Nov;69(5):1080-94.

PMID:
11590548
[PubMed - indexed for MEDLINE]
Free PMC Article
5.
6.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
[PubMed - indexed for MEDLINE]
7.

A genomewide admixture map for Latino populations.

Price AL, Patterson N, Yu F, Cox DR, Waliszewska A, McDonald GJ, Tandon A, Schirmer C, Neubauer J, Bedoya G, Duque C, Villegas A, Bortolini MC, Salzano FM, Gallo C, Mazzotti G, Tello-Ruiz M, Riba L, Aguilar-Salinas CA, Canizales-Quinteros S, Menjivar M, Klitz W, Henderson B, Haiman CA, Winkler C, Tusie-Luna T, Ruiz-Linares A, Reich D.

Am J Hum Genet. 2007 Jun;80(6):1024-36. Epub 2007 Apr 13.

PMID:
17503322
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Methods for high-density admixture mapping of disease genes.

Patterson N, Hattangadi N, Lane B, Lohmueller KE, Hafler DA, Oksenberg JR, Hauser SL, Smith MW, O'Brien SJ, Altshuler D, Daly MJ, Reich D.

Am J Hum Genet. 2004 May;74(5):979-1000. Epub 2004 Apr 14.

PMID:
15088269
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genotype imputation for African Americans using data from HapMap phase II versus 1000 genomes projects.

Sung YJ, Gu CC, Tiwari HK, Arnett DK, Broeckel U, Rao DC.

Genet Epidemiol. 2012 Jul;36(5):508-16. doi: 10.1002/gepi.21647. Epub 2012 May 29.

PMID:
22644746
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A generic coalescent-based framework for the selection of a reference panel for imputation.

Paşaniuc B, Avinery R, Gur T, Skibola CF, Bracci PM, Halperin E.

Genet Epidemiol. 2010 Dec;34(8):773-82. doi: 10.1002/gepi.20505.

PMID:
21058333
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Towards a comprehensive structural variation map of an individual human genome.

Pang AW, MacDonald JR, Pinto D, Wei J, Rafiq MA, Conrad DF, Park H, Hurles ME, Lee C, Venter JC, Kirkness EF, Levy S, Feuk L, Scherer SW.

Genome Biol. 2010;11(5):R52. doi: 10.1186/gb-2010-11-5-r52. Epub 2010 May 19.

PMID:
20482838
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.

PMID:
22174790
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sequence features in regions of weak and strong linkage disequilibrium.

Smith AV, Thomas DJ, Munro HM, Abecasis GR.

Genome Res. 2005 Nov;15(11):1519-34.

PMID:
16251462
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Constitutive heterochromatin polymorphisms in human chromosomes identified by whole comparative genomic hybridization.

Dávila-Rodríguez MI, Cortés Gutiérrez EI, Cerda Flores RM, Pita M, Fernández JL, López-Fernández C, Gosálvez J.

Eur J Histochem. 2011;55(3):e28. doi: 10.4081/ejh.2011.e28. Epub 2011 Aug 27.

PMID:
22073375
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

LDB2000: sequence-based integrated maps of the human genome.

Ke X, Tapper W, Collins A.

Bioinformatics. 2001 Jul;17(7):581-6.

PMID:
11448876
[PubMed - indexed for MEDLINE]
Free Article
16.

Linkage mapping bovine EST-based SNP.

Snelling WM, Casas E, Stone RT, Keele JW, Harhay GP, Bennett GL, Smith TP.

BMC Genomics. 2005 May 19;6:74.

PMID:
15943875
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

LDMAP: the construction of high-resolution linkage disequilibrium maps of the human genome.

Kuo TY, Lau W, Collins AR.

Methods Mol Biol. 2007;376:47-57.

PMID:
17984537
[PubMed - indexed for MEDLINE]
18.

High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence.

Rannala B, Reeve JP.

Am J Hum Genet. 2001 Jul;69(1):159-78. Epub 2001 Jun 15.

PMID:
11410841
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).

Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger SP, Matnyazov R, Clark DR, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Carver BF, Perry S, Sorrells ME, Akhunov ED.

BMC Genomics. 2010 Dec 29;11:727. doi: 10.1186/1471-2164-11-727.

PMID:
21190581
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Long-range LD can confound genome scans in admixed populations.

Price AL, Weale ME, Patterson N, Myers SR, Need AC, Shianna KV, Ge D, Rotter JI, Torres E, Taylor KD, Goldstein DB, Reich D.

Am J Hum Genet. 2008 Jul;83(1):132-5; author reply 135-9. doi: 10.1016/j.ajhg.2008.06.005. No abstract available.

PMID:
18606306
[PubMed - indexed for MEDLINE]
Free PMC Article

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