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Results: 1 to 20 of 109

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1.

The three-dimensional context of a double helix determines the fluorescence of the internucleoside-tethered pair of fluorophores.

Metelev V, Zhang S, Tabatadze D, Kumar AT, Bogdanov A Jr.

Mol Biosyst. 2013 Oct;9(10):2447-53. doi: 10.1039/c3mb70108e.

2.
3.

Fluorescence energy transfer analysis of DNA structures containing several bulges and their interaction with CAP.

Stühmeier F, Hillisch A, Clegg RM, Diekman S.

J Mol Biol. 2000 Oct 6;302(5):1081-100.

PMID:
11183776
4.

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies.

Norman DG, Grainger RJ, Uhrín D, Lilley DM.

Biochemistry. 2000 May 30;39(21):6317-24.

PMID:
10828944
5.

Sensing of transcription factor binding via cyanine dye pair fluorescence lifetime changes.

Bogdanov AA Jr, Metelev V, Zhang S, Kumar AT.

Mol Biosyst. 2012 Aug;8(8):2166-73. doi: 10.1039/c2mb25057h. Epub 2012 Jun 19.

6.

Orientation of cyanine fluorophores terminally attached to DNA via long, flexible tethers.

Ouellet J, Schorr S, Iqbal A, Wilson TJ, Lilley DM.

Biophys J. 2011 Sep 7;101(5):1148-54. doi: 10.1016/j.bpj.2011.07.007.

7.

Bulk and single-molecule fluorescence studies of the saturation of the DNA double helix using YOYO-3 intercalator dye.

Lopez SG, Ruedas-Rama MJ, Casares S, Alvarez-Pez JM, Orte A.

J Phys Chem B. 2012 Sep 27;116(38):11561-9. Epub 2012 Sep 14.

PMID:
22947035
8.

Development of a robust model system of FRET using base surrogates tethering fluorophores for strict control of their position and orientation within DNA duplex.

Kato T, Kashida H, Kishida H, Yada H, Okamoto H, Asanuma H.

J Am Chem Soc. 2013 Jan 16;135(2):741-50. doi: 10.1021/ja309279w. Epub 2013 Jan 8.

PMID:
23240980
9.

Hairpin-like fluorescent probe for imaging of NF-κB transcription factor activity.

Metelev V, Zhang S, Tabatadze D, Bogdanov A.

Bioconjug Chem. 2011 Apr 20;22(4):759-65. doi: 10.1021/bc100553e. Epub 2011 Mar 21.

10.
11.

Photophysics of backbone fluorescent DNA modifications: reducing uncertainties in FRET.

Ranjit S, Gurunathan K, Levitus M.

J Phys Chem B. 2009 Jun 4;113(22):7861-6. doi: 10.1021/jp810842u.

PMID:
19473039
12.

Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer.

Cardullo RA, Agrawal S, Flores C, Zamecnik PC, Wolf DE.

Proc Natl Acad Sci U S A. 1988 Dec;85(23):8790-4.

13.

Characterization of nucleobase analogue FRET acceptor tCnitro.

Preus S, Börjesson K, Kilså K, Albinsson B, Wilhelmsson LM.

J Phys Chem B. 2010 Jan 21;114(2):1050-6. doi: 10.1021/jp909471b.

PMID:
20039634
14.

Spectroscopic characterization of fluorescein- and tetramethylrhodamine-labeled oligonucleotides and their complexes with a DNA template.

Wang L, Gaigalas AK, Blasic J, Holden MJ.

Spectrochim Acta A Mol Biomol Spectrosc. 2004 Oct;60(12):2741-50.

PMID:
15350908
15.

Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids.

Iqbal A, Arslan S, Okumus B, Wilson TJ, Giraud G, Norman DG, Ha T, Lilley DM.

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11176-81. doi: 10.1073/pnas.0801707105. Epub 2008 Aug 1.

17.

Fluorescence resonance energy transfer between donor-acceptor pair on two oligonucleotides hybridized adjacently to DNA template.

Wang L, Gaigalas AK, Blasic J, Holden MJ, Gallagher DT, Pires R.

Biopolymers. 2003;72(6):401-12.

PMID:
14587062
18.

The Effect of dye-dye interactions on the spatial resolution of single-molecule FRET measurements in nucleic acids.

Di Fiori N, Meller A.

Biophys J. 2010 May 19;98(10):2265-72. doi: 10.1016/j.bpj.2010.02.008.

19.

Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent properties of conjugated dyes.

Nazarenko I, Pires R, Lowe B, Obaidy M, Rashtchian A.

Nucleic Acids Res. 2002 May 1;30(9):2089-195.

20.

Indocyanine dyes approach free rotation at the 3' terminus of A-RNA: a comparison with the 5' terminus and consequences for fluorescence resonance energy transfer.

Milas P, Gamari BD, Parrot L, Krueger BP, Rahmanseresht S, Moore J, Goldner LS.

J Phys Chem B. 2013 Jul 25;117(29):8649-58. doi: 10.1021/jp311071y. Epub 2013 Jul 15.

PMID:
23799279
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