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Items: 1 to 20 of 101

1.

Structure of dihydrouridine synthase C (DusC) from Escherichia coli.

Chen M, Yu J, Tanaka Y, Tanaka M, Tanaka I, Yao M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):834-8. doi: 10.1107/S1744309113019489. Epub 2013 Jul 27.

2.

Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.

Byrne RT, Jenkins HT, Peters DT, Whelan F, Stowell J, Aziz N, Kasatsky P, Rodnina MV, Koonin EV, Konevega AL, Antson AA.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6033-7. doi: 10.1073/pnas.1500161112. Epub 2015 Apr 22.

3.

Molecular basis of dihydrouridine formation on tRNA.

Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A, Hirano N, Suzuki T, Yao M, Tanaka I.

Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19593-8. doi: 10.1073/pnas.1112352108. Epub 2011 Nov 28.

4.

Crystallization and preliminary X-ray crystallographic analysis of dihydrouridine synthase from Thermus thermophilus and its complex with tRNA.

Yu F, Tanaka Y, Yamamoto S, Nakamura A, Kita S, Hirano N, Tanaka I, Yao M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jun 1;67(Pt 6):685-8. doi: 10.1107/S1744309111012486. Epub 2011 May 25.

5.

In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus, an extreme-thermophilic eubacterium.

Kusuba H, Yoshida T, Iwasaki E, Awai T, Kazayama A, Hirata A, Tomikawa C, Yamagami R, Hori H.

J Biochem. 2015 Dec;158(6):513-21. doi: 10.1093/jb/mvv066. Epub 2015 Jun 24.

PMID:
26112661
6.

From bacterial to human dihydrouridine synthase: automated structure determination.

Whelan F, Jenkins HT, Griffiths SC, Byrne RT, Dodson EJ, Antson AA.

Acta Crystallogr D Biol Crystallogr. 2015 Jul;71(Pt 7):1564-71. doi: 10.1107/S1399004715009220. Epub 2015 Jun 30.

7.

The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.

Ochi A, Makabe K, Yamagami R, Hirata A, Sakaguchi R, Hou YM, Watanabe K, Nureki O, Kuwajima K, Hori H.

J Biol Chem. 2013 Aug 30;288(35):25562-74. doi: 10.1074/jbc.M113.485128. Epub 2013 Jul 18.

8.

Molecular determinants of dihydrouridine synthase activity.

Savage DF, de Crécy-Lagard V, Bishop AC.

FEBS Lett. 2006 Oct 2;580(22):5198-202. Epub 2006 Sep 5.

9.

Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand.

Tanaka Y, Yamagata S, Kitago Y, Yamada Y, Chimnaronk S, Yao M, Tanaka I.

RNA. 2009 Aug;15(8):1498-506. doi: 10.1261/rna.1614709. Epub 2009 Jun 9.

10.

Mechanism of dihydrouridine synthase 2 from yeast and the importance of modifications for efficient tRNA reduction.

Rider LW, Ottosen MB, Gattis SG, Palfey BA.

J Biol Chem. 2009 Apr 17;284(16):10324-33. doi: 10.1074/jbc.M806137200. Epub 2009 Jan 12.

11.

Structural and mutational studies of the catalytic domain of colicin E5: a tRNA-specific ribonuclease.

Lin YL, Elias Y, Huang RH.

Biochemistry. 2005 Aug 9;44(31):10494-500.

PMID:
16060658
12.

RNA-binding site of Escherichia coli peptidyl-tRNA hydrolase.

Giorgi L, Bontems F, Fromant M, Aubard C, Blanquet S, Plateau P.

J Biol Chem. 2011 Nov 11;286(45):39585-94. doi: 10.1074/jbc.M111.281840. Epub 2011 Sep 19.

13.

An extended dsRBD is required for post-transcriptional modification in human tRNAs.

Bou-Nader C, Pecqueur L, Bregeon D, Kamah A, Guérineau V, Golinelli-Pimpaneau B, Guimarães BG, Fontecave M, Hamdane D.

Nucleic Acids Res. 2015 Oct 30;43(19):9446-56. doi: 10.1093/nar/gkv989. Epub 2015 Oct 1.

14.

Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.

Ito K, Murakami R, Mochizuki M, Qi H, Shimizu Y, Miura K, Ueda T, Uchiumi T.

Nucleic Acids Res. 2012 Nov 1;40(20):10521-31. doi: 10.1093/nar/gks790. Epub 2012 Aug 25.

15.

Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli.

Kitamura A, Sengoku T, Nishimoto M, Yokoyama S, Bessho Y.

Protein Sci. 2011 Jul;20(7):1105-13. doi: 10.1002/pro.659. Epub 2011 Jun 2.

16.

X-ray structure of tRNA pseudouridine synthase TruD reveals an inserted domain with a novel fold.

Ericsson UB, Nordlund P, Hallberg BM.

FEBS Lett. 2004 May 7;565(1-3):59-64.

17.

The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli.

Dong X, Kato-Murayama M, Muramatsu T, Mori H, Shirouzu M, Bessho Y, Yokoyama S.

Protein Sci. 2007 Mar;16(3):528-34. Epub 2007 Jan 22.

19.

Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.

Kim J, Almo SC.

BMC Struct Biol. 2013 Apr 24;13:5. doi: 10.1186/1472-6807-13-5.

20.

The crystal structure of Escherichia coli spermidine synthase SpeE reveals a unique substrate-binding pocket.

Zhou X, Chua TK, Tkaczuk KL, Bujnicki JM, Sivaraman J.

J Struct Biol. 2010 Mar;169(3):277-85. doi: 10.1016/j.jsb.2009.12.024. Epub 2010 Jan 4.

PMID:
20051267
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