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Results: 1 to 20 of 99

1.

DNA methylation, genotype and gene expression: who is driving and who is along for the ride?

Jones MJ, Fejes AP, Kobor MS.

Genome Biol. 2013 Jul 29;14(7):126. doi: 10.1186/gb-2013-14-7-126.

PMID:
23899167
[PubMed - in process]
Free PMC Article
2.

Genome-wide association between DNA methylation and alternative splicing in an invertebrate.

Flores K, Wolschin F, Corneveaux JJ, Allen AN, Huentelman MJ, Amdam GV.

BMC Genomics. 2012 Sep 15;13:480. doi: 10.1186/1471-2164-13-480.

PMID:
22978521
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes.

Olson CE, Roberts SB.

Front Physiol. 2014 Jun 17;5:224. doi: 10.3389/fphys.2014.00224. eCollection 2014.

PMID:
24987376
[PubMed]
Free PMC Article
4.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

PMID:
23804401
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

SNP discovery in the bovine milk transcriptome using RNA-Seq technology.

Cánovas A, Rincon G, Islas-Trejo A, Wickramasinghe S, Medrano JF.

Mamm Genome. 2010 Dec;21(11-12):592-8. doi: 10.1007/s00335-010-9297-z. Epub 2010 Nov 6.

PMID:
21057797
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK.

Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Erratum in: Genome Biol. 2011;12(6):405.

PMID:
21251332
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.

Gertz J, Varley KE, Reddy TE, Bowling KM, Pauli F, Parker SL, Kucera KS, Willard HF, Myers RM.

PLoS Genet. 2011 Aug;7(8):e1002228. doi: 10.1371/journal.pgen.1002228. Epub 2011 Aug 11.

PMID:
21852959
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage.

Chavez L, Jozefczuk J, Grimm C, Dietrich J, Timmermann B, Lehrach H, Herwig R, Adjaye J.

Genome Res. 2010 Oct;20(10):1441-50. doi: 10.1101/gr.110114.110. Epub 2010 Aug 27.

PMID:
20802089
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

PMID:
20852635
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A cross-platform genome-wide comparison of the relationship of promoter DNA methylation to gene expression.

Plume JM, Beach SR, Brody GH, Philibert RA.

Front Genet. 2012 Feb 6;3:12. doi: 10.3389/fgene.2012.00012. eCollection 2012.

PMID:
22363339
[PubMed]
Free PMC Article
11.

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

Zhang B, Zhou Y, Lin N, Lowdon RF, Hong C, Nagarajan RP, Cheng JB, Li D, Stevens M, Lee HJ, Xing X, Zhou J, Sundaram V, Elliott G, Gu J, Shi T, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Maire CL, Ligon KL, Madden PA, Tam A, Moore R, Hirst M, Marra MA, Zhang B, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1522-40. doi: 10.1101/gr.156539.113. Epub 2013 Jun 26.

PMID:
23804400
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver.

Xie L, Weichel B, Ohm JE, Zhang K.

BMC Syst Biol. 2011 Dec 23;5 Suppl 3:S4. doi: 10.1186/1752-0509-5-S3-S4. Epub 2011 Dec 23.

PMID:
22784623
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc.

Gavery MR, Roberts SB.

PeerJ. 2013 Nov 21;1:e215. doi: 10.7717/peerj.215. eCollection 2013.

PMID:
24282674
[PubMed]
Free PMC Article
14.

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks.

Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, Sato S, Nakabayashi K, Hata K, Sotomaru Y, Suzuki Y, Kono T.

PLoS Genet. 2012 Jan;8(1):e1002440. doi: 10.1371/journal.pgen.1002440. Epub 2012 Jan 5.

PMID:
22242016
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Whole-genome DNA methylation in skin lesions from patients with psoriasis vulgaris.

Zhang P, Zhao M, Liang G, Yin G, Huang D, Su F, Zhai H, Wang L, Su Y, Lu Q.

J Autoimmun. 2013 Mar;41:17-24. doi: 10.1016/j.jaut.2013.01.001. Epub 2013 Jan 29.

PMID:
23369618
[PubMed - indexed for MEDLINE]
16.

Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing.

Ruike Y, Imanaka Y, Sato F, Shimizu K, Tsujimoto G.

BMC Genomics. 2010 Feb 25;11:137. doi: 10.1186/1471-2164-11-137.

PMID:
20181289
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

An integrated workflow for DNA methylation analysis.

Li P, Demirci F, Mahalingam G, Demirci C, Nakano M, Meyers BC.

J Genet Genomics. 2013 May 20;40(5):249-60. doi: 10.1016/j.jgg.2013.03.010. Epub 2013 Mar 30. Review.

PMID:
23706300
[PubMed - indexed for MEDLINE]
18.

Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites.

Hogart A, Lichtenberg J, Ajay SS, Anderson S; NIH Intramural Sequencing Center, Margulies EH, Bodine DM.

Genome Res. 2012 Aug;22(8):1407-18. doi: 10.1101/gr.132878.111. Epub 2012 Jun 8.

PMID:
22684279
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide analysis of DNA methylation in bovine placentas.

Su J, Wang Y, Xing X, Liu J, Zhang Y.

BMC Genomics. 2014 Jan 8;15:12. doi: 10.1186/1471-2164-15-12.

PMID:
24397284
[PubMed - in process]
Free PMC Article
20.

Genomics of CpG methylation in developing and developed zebrafish.

McGaughey DM, Abaan HO, Miller RM, Kropp PA, Brody LC.

G3 (Bethesda). 2014 Mar 21;4(5):861-9. doi: 10.1534/g3.113.009514.

PMID:
24657902
[PubMed - in process]
Free PMC Article

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