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T4SP: a novel tool and database for type IV secretion systems in bacterial genomes.

Zhang W, Yu WW, Liu D, Li M, DU PC, Wu YL, Gao GF, Chen C.

Biomed Environ Sci. 2013 Jul;26(7):614-7. doi: 10.3967/0895-3988.2013.07.015. No abstract available.


Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion.

Guglielmini J, Néron B, Abby SS, Garcillán-Barcia MP, de la Cruz F, Rocha EP.

Nucleic Acids Res. 2014 May;42(9):5715-27. doi: 10.1093/nar/gku194. Epub 2014 Mar 12.


Concordance analysis of microbial genomes.

Bruccoleri RE, Dougherty TJ, Davison DB.

Nucleic Acids Res. 1998 Oct 1;26(19):4482-6.


EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.

Eichinger V, Nussbaumer T, Platzer A, Jehl MA, Arnold R, Rattei T.

Nucleic Acids Res. 2016 Jan 4;44(D1):D669-74. doi: 10.1093/nar/gkv1269. Epub 2015 Nov 20.


SecReT4: a web-based bacterial type IV secretion system resource.

Bi D, Liu L, Tai C, Deng Z, Rajakumar K, Ou HY.

Nucleic Acids Res. 2013 Jan;41(Database issue):D660-5. doi: 10.1093/nar/gks1248. Epub 2012 Nov 28.


AtlasT4SS: a curated database for type IV secretion systems.

Souza RC, del Rosario Quispe Saji G, Costa MO, Netto DS, Lima NC, Klein CC, Vasconcelos AT, Nicolás MF.

BMC Microbiol. 2012 Aug 9;12:172. doi: 10.1186/1471-2180-12-172.


Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

Boyer F, Fichant G, Berthod J, Vandenbrouck Y, Attree I.

BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104.


Distribution and diversity of bacterial secretion systems across metagenomic datasets.

Barret M, Egan F, O'Gara F.

Environ Microbiol Rep. 2013 Feb;5(1):117-26. doi: 10.1111/j.1758-2229.2012.00394.x. Epub 2012 Oct 8.


Effective identification of bacterial type III secretion signals using joint element features.

Wang Y, Sun M, Bao H, Zhang Q, Guo D.

PLoS One. 2013 Apr 4;8(4):e59754. doi: 10.1371/journal.pone.0059754. Print 2013.


Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered.

Barret M, Egan F, Fargier E, Morrissey JP, O'Gara F.

Microbiology. 2011 Jun;157(Pt 6):1726-39. doi: 10.1099/mic.0.048645-0. Epub 2011 Apr 7.


T3DB: an integrated database for bacterial type III secretion system.

Wang Y, Huang H, Sun M, Zhang Q, Guo D.

BMC Bioinformatics. 2012 Apr 30;13:66. doi: 10.1186/1471-2105-13-66.


Identification and functional characterization of gene components of Type VI Secretion system in bacterial genomes.

Shrivastava S, Mande SS.

PLoS One. 2008 Aug 13;3(8):e2955. doi: 10.1371/journal.pone.0002955.


T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System.

Tay DM, Govindarajan KR, Khan AM, Ong TY, Samad HM, Soh WW, Tong M, Zhang F, Tan TW.

BMC Bioinformatics. 2010 Oct 15;11 Suppl 7:S4. doi: 10.1186/1471-2105-11-S7-S4.


The Comprehensive Microbial Resource.

Peterson JD, Umayam LA, Dickinson T, Hickey EK, White O.

Nucleic Acids Res. 2001 Jan 1;29(1):123-5.


Type-IVC secretion system: a novel subclass of type IV secretion system (T4SS) common existing in gram-positive genus Streptococcus.

Zhang W, Rong C, Chen C, Gao GF.

PLoS One. 2012;7(10):e46390. doi: 10.1371/journal.pone.0046390. Epub 2012 Oct 4.


Type II secretion: a protein secretion system for all seasons.

Cianciotto NP.

Trends Microbiol. 2005 Dec;13(12):581-8. Epub 2005 Oct 10. Review.


The type II secretion system - a dynamic fiber assembly nanomachine.

Campos M, Cisneros DA, Nivaskumar M, Francetic O.

Res Microbiol. 2013 Jul-Aug;164(6):545-55. doi: 10.1016/j.resmic.2013.03.013. Epub 2013 Mar 27. Review.


Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system.

Beeckman DS, Vanrompay DC.

Curr Issues Mol Biol. 2010;12(1):17-41. Epub 2009 Jul 16.


Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.

Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB.

BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/1471-2164-12-146.

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