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Results: 1 to 20 of 107

Similar articles for PubMed (Select 23889170)

1.

StressChip as a high-throughput tool for assessing microbial community responses to environmental stresses.

Zhou A, He Z, Qin Y, Lu Z, Deng Y, Tu Q, Hemme CL, Van Nostrand JD, Wu L, Hazen TC, Arkin AP, Zhou J.

Environ Sci Technol. 2013 Sep 3;47(17):9841-9. doi: 10.1021/es4018656. Epub 2013 Aug 13.

PMID:
23889170
2.

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK.

ISME J. 2012 Sep;6(9):1715-27. doi: 10.1038/ismej.2012.59. Epub 2012 Jun 21.

3.

Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF.

PLoS One. 2012;7(5):e37118. doi: 10.1371/journal.pone.0037118. Epub 2012 May 16.

4.

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11. Print 2011.

5.

Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill.

Bik HM, Halanych KM, Sharma J, Thomas WK.

PLoS One. 2012;7(6):e38550. doi: 10.1371/journal.pone.0038550. Epub 2012 Jun 6.

6.

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

Stewart FJ, Ulloa O, DeLong EF.

Environ Microbiol. 2012 Jan;14(1):23-40. doi: 10.1111/j.1462-2920.2010.02400.x. Epub 2011 Jan 7.

PMID:
21210935
7.

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.

He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J.

ISME J. 2010 Sep;4(9):1167-79. doi: 10.1038/ismej.2010.46. Epub 2010 Apr 29.

PMID:
20428223
8.

A shift in the archaeal nitrifier community in response to natural and anthropogenic disturbances in the northern Gulf of Mexico.

Newell SE, Eveillard D, McCarthy MJ, Gardner WS, Liu Z, Ward BB.

Environ Microbiol Rep. 2014 Feb;6(1):106-12. doi: 10.1111/1758-2229.12114. Epub 2013 Nov 12.

PMID:
24596268
9.

The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities.

Lee YJ, van Nostrand JD, Tu Q, Lu Z, Cheng L, Yuan T, Deng Y, Carter MQ, He Z, Wu L, Yang F, Xu J, Zhou J.

ISME J. 2013 Oct;7(10):1974-84. doi: 10.1038/ismej.2013.88. Epub 2013 Jun 13.

10.

Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome.

Simon C, Wiezer A, Strittmatter AW, Daniel R.

Appl Environ Microbiol. 2009 Dec;75(23):7519-26. doi: 10.1128/AEM.00946-09. Epub 2009 Oct 2.

11.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, Hazen TC, Zhou J.

ISME J. 2012 Feb;6(2):451-60. doi: 10.1038/ismej.2011.91. Epub 2011 Aug 4.

12.

Community genomics among stratified microbial assemblages in the ocean's interior.

DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM.

Science. 2006 Jan 27;311(5760):496-503.

13.

Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea.

Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL.

Appl Environ Microbiol. 2010 Feb;76(3):757-68. doi: 10.1128/AEM.02409-09. Epub 2009 Nov 30.

14.

Microbial community response to a simulated hydrocarbon spill in mangrove sediments.

Taketani RG, Franco NO, Rosado AS, van Elsas JD.

J Microbiol. 2010 Feb;48(1):7-15. doi: 10.1007/s12275-009-0147-1. Epub 2010 Mar 11.

PMID:
20221723
15.

Analysis of microbial gene transcripts in environmental samples.

Poretsky RS, Bano N, Buchan A, LeCleir G, Kleikemper J, Pickering M, Pate WM, Moran MA, Hollibaugh JT.

Appl Environ Microbiol. 2005 Jul;71(7):4121-6.

16.

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray.

Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J.

Appl Environ Microbiol. 2010 Aug;76(16):5636-8. doi: 10.1128/AEM.00303-10. Epub 2010 Jun 25.

17.

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis.

Tu Q, Yu H, He Z, Deng Y, Wu L, Van Nostrand JD, Zhou A, Voordeckers J, Lee YJ, Qin Y, Hemme CL, Shi Z, Xue K, Yuan T, Wang A, Zhou J.

Mol Ecol Resour. 2014 Sep;14(5):914-28. doi: 10.1111/1755-0998.12239. Epub 2014 Mar 14.

PMID:
24520909
18.

Geochip-based analysis of microbial communities in alpine meadow soils in the Qinghai-Tibetan plateau.

Zhang Y, Lu Z, Liu S, Yang Y, He Z, Ren Z, Zhou J, Li D.

BMC Microbiol. 2013 Mar 29;13:72. doi: 10.1186/1471-2180-13-72.

19.

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.

Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A.

J Biotechnol. 2009 Jun 1;142(1):38-49. doi: 10.1016/j.jbiotec.2009.02.010. Epub 2009 Feb 27.

PMID:
19480946
20.

Pattern and synchrony of gene expression among sympatric marine microbial populations.

Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, Scholin CA, DeLong EF.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E488-97. doi: 10.1073/pnas.1222099110. Epub 2013 Jan 23.

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