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Items: 1 to 20 of 102

1.

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae.

Geistlinger L, Csaba G, Dirmeier S, Küffner R, Zimmer R.

Nucleic Acids Res. 2013 Oct;41(18):8452-63. doi: 10.1093/nar/gkt631. Epub 2013 Jul 19.

2.

Maf1, repressor of tRNA transcription, is involved in the control of gluconeogenetic genes in Saccharomyces cerevisiae.

Morawiec E, Wichtowska D, Graczyk D, Conesa C, Lefebvre O, Boguta M.

Gene. 2013 Aug 15;526(1):16-22. doi: 10.1016/j.gene.2013.04.055. Epub 2013 May 5.

PMID:
23657116
3.

Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast.

Fendt SM, Oliveira AP, Christen S, Picotti P, Dechant RC, Sauer U.

Mol Syst Biol. 2010 Nov 30;6:432. doi: 10.1038/msb.2010.91.

4.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

5.

Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast.

Chang YW, Robert Liu FG, Yu N, Sung HM, Yang P, Wang D, Huang CJ, Shih MC, Li WH.

Mol Biol Evol. 2008 Sep;25(9):1863-75. doi: 10.1093/molbev/msn138. Epub 2008 Jun 23.

6.

Differences in regulation of yeast gluconeogenesis revealed by Cat8p-independent activation of PCK1 and FBP1 genes in Kluyveromyces lactis.

Georis I, Krijger JJ, Breunig KD, Vandenhaute J.

Mol Gen Genet. 2000 Sep;264(1-2):193-203.

PMID:
11016849
8.

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.

BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355.

9.

Virtual mutagenesis of the yeast cyclins genetic network reveals complex dynamics of transcriptional control networks.

Vohradska E, Vohradsky J.

PLoS One. 2011 Apr 25;6(4):e18827. doi: 10.1371/journal.pone.0018827.

10.

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface.

Abdulrehman D, Monteiro PT, Teixeira MC, Mira NP, Lourenço AB, dos Santos SC, Cabrito TR, Francisco AP, Madeira SC, Aires RS, Oliveira AL, Sá-Correia I, Freitas AT.

Nucleic Acids Res. 2011 Jan;39(Database issue):D136-40. doi: 10.1093/nar/gkq964. Epub 2010 Oct 23.

11.

Transcriptional responses to fatty acid are coordinated by combinatorial control.

Smith JJ, Ramsey SA, Marelli M, Marzolf B, Hwang D, Saleem RA, Rachubinski RA, Aitchison JD.

Mol Syst Biol. 2007;3:115. Epub 2007 Jun 5.

12.

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

Herrgård MJ, Lee BS, Portnoy V, Palsson BØ.

Genome Res. 2006 May;16(5):627-35. Epub 2006 Apr 10.

13.

On cycles in the transcription network of Saccharomyces cerevisiae.

Jeong J, Berman P.

BMC Syst Biol. 2008 Jan 31;2:12. doi: 10.1186/1752-0509-2-12.

14.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

15.

Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae.

Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN.

BMC Bioinformatics. 2006 Oct 28;7:478.

16.
17.

One hub-one process: a tool based view on regulatory network topology.

Axelsen JB, Bernhardsson S, Sneppen K.

BMC Syst Biol. 2008 Mar 4;2:25. doi: 10.1186/1752-0509-2-25.

18.

Construction and application of a protein and genetic interaction network (yeast interactome).

Stuart GR, Copeland WC, Strand MK.

Nucleic Acids Res. 2009 Apr;37(7):e54. doi: 10.1093/nar/gkp140. Epub 2009 Mar 9.

19.

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

J Biol. 2006;5(4):11. Epub 2006 Jun 8.

20.

Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae.

Pham H, Ferrari R, Cokus SJ, Kurdistani SK, Pellegrini M.

Mol Syst Biol. 2007;3:153. Epub 2007 Dec 18.

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