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Results: 1 to 20 of 118

1.

Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencing.

Kielpinski LJ, Boyd M, Sandelin A, Vinther J.

Methods Mol Biol. 2013;1038:213-31. doi: 10.1007/978-1-62703-514-9_13.

PMID:
23872978
[PubMed - indexed for MEDLINE]
2.

Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription.

Vilfan ID, Tsai YC, Clark TA, Wegener J, Dai Q, Yi C, Pan T, Turner SW, Korlach J.

J Nanobiotechnology. 2013 Apr 3;11:8. doi: 10.1186/1477-3155-11-8.

PMID:
23552456
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
[PubMed - indexed for MEDLINE]
4.

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

Hafner M, Renwick N, Brown M, Mihailović A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T.

RNA. 2011 Sep;17(9):1697-712. doi: 10.1261/rna.2799511. Epub 2011 Jul 20.

PMID:
21775473
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB.

Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12.

PMID:
22241775
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility.

Kielpinski LJ, Vinther J.

Nucleic Acids Res. 2014 Apr;42(8):e70. doi: 10.1093/nar/gku167. Epub 2014 Feb 24.

PMID:
24569351
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties.

Blondal T, Thorisdottir A, Unnsteinsdottir U, Hjorleifsdottir S, Aevarsson A, Ernstsson S, Fridjonsson OH, Skirnisdottir S, Wheat JO, Hermannsdottir AG, Sigurdsson ST, Hreggvidsson GO, Smith AV, Kristjansson JK.

Nucleic Acids Res. 2005 Jan 7;33(1):135-42. Print 2005.

PMID:
15642699
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Linear amplification for deep sequencing.

Hoeijmakers WA, Bártfai R, Françoijs KJ, Stunnenberg HG.

Nat Protoc. 2011 Jun 23;6(7):1026-36. doi: 10.1038/nprot.2011.345.

PMID:
21720315
[PubMed - indexed for MEDLINE]
9.

Construction of RNA-Seq libraries from large and microscopic tissues for the Illumina sequencing platform.

Atamian HS, Kaloshian I.

Methods Mol Biol. 2012;883:47-57. doi: 10.1007/978-1-61779-839-9_3.

PMID:
22589123
[PubMed - indexed for MEDLINE]
10.

Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.

Schutz K, Hesselberth JR, Fields S.

RNA. 2010 Mar;16(3):621-31. doi: 10.1261/rna.1934910. Epub 2010 Jan 14.

PMID:
20075163
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R.

J Vis Exp. 2011 Oct 27;(56):e3340. doi: 10.3791/3340.

PMID:
22064688
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Modular tagging of amplicons using a single PCR for high-throughput sequencing.

Clarke LJ, Czechowski P, Soubrier J, Stevens MI, Cooper A.

Mol Ecol Resour. 2014 Jan;14(1):117-21. doi: 10.1111/1755-0998.12162. Epub 2013 Sep 13.

PMID:
24028345
[PubMed - indexed for MEDLINE]
13.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.

Kawano M, Kawazu C, Lizio M, Kawaji H, Carninci P, Suzuki H, Hayashizaki Y.

Biotechniques. 2010 Oct;49(4):751-5. doi: 10.2144/000113516.

PMID:
20964636
[PubMed - indexed for MEDLINE]
Free Article
14.

High-throughput RNA sequencing in B-cell lymphomas.

Xiao W, Tran B, Staudt LM, Schmitz R.

Methods Mol Biol. 2013;971:295-312. doi: 10.1007/978-1-62703-269-8_17.

PMID:
23296971
[PubMed - indexed for MEDLINE]
15.

Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.

Linsen SE, Cuppen E.

Methods Mol Biol. 2012;822:205-17. doi: 10.1007/978-1-61779-427-8_14.

PMID:
22144201
[PubMed - indexed for MEDLINE]
16.

Small RNA library construction for high-throughput sequencing.

McGinn J, Czech B.

Methods Mol Biol. 2014;1093:195-208. doi: 10.1007/978-1-62703-694-8_16.

PMID:
24178567
[PubMed - indexed for MEDLINE]
17.

Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions.

Su Y, Lin L, Tian G, Chen C, Liu T, Xu X, Qi X, Zhang X, Yang H.

Sci China C Life Sci. 2009 May;52(5):483-91. doi: 10.1007/s11427-009-0066-8. Epub 2009 May 27.

PMID:
19471873
[PubMed - indexed for MEDLINE]
18.

SuperSAGE: powerful serial analysis of gene expression.

Matsumura H, Urasaki N, Yoshida K, Krüger DH, Kahl G, Terauchi R.

Methods Mol Biol. 2012;883:1-17. doi: 10.1007/978-1-61779-839-9_1.

PMID:
22589121
[PubMed - indexed for MEDLINE]
19.

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.

Shiroguchi K, Jia TZ, Sims PA, Xie XS.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1347-52. doi: 10.1073/pnas.1118018109. Epub 2012 Jan 9.

PMID:
22232676
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RNA captor: a tool for RNA characterization.

Clepet C.

PLoS One. 2011 Apr 13;6(4):e18445. doi: 10.1371/journal.pone.0018445.

PMID:
21533245
[PubMed - indexed for MEDLINE]
Free PMC Article

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