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Results: 1 to 20 of 101

1.

Fast detection of dense subgraphs with iterative shrinking and expansion.

Liu H, Latecki LJ, Yan S.

IEEE Trans Pattern Anal Mach Intell. 2013 Sep;35(9):2131-42. doi: 10.1109/TPAMI.2013.16.

PMID:
23868775
[PubMed]
2.

Fast Detection of Dense Subgraphs with Iterative Shrinking and Expansion.

Liu H, Latecki LJ, Yan S.

IEEE Trans Pattern Anal Mach Intell. 2013 Jan 4. [Epub ahead of print]

PMID:
23295734
[PubMed - as supplied by publisher]
3.

The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search trees.

Demeyer S, Michoel T, Fostier J, Audenaert P, Pickavet M, Demeester P.

PLoS One. 2013 Apr 19;8(4):e61183. doi: 10.1371/journal.pone.0061183. Print 2013.

PMID:
23620730
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Accurate classification of protein structural families using coherent subgraph analysis.

Huan J, Wang W, Washington A, Prins J, Shah R, Tropsha A.

Pac Symp Biocomput. 2004:411-22.

PMID:
14992521
[PubMed - indexed for MEDLINE]
5.

The Index-based Subgraph Matching Algorithm with General Symmetries (ISMAGS): exploiting symmetry for faster subgraph enumeration.

Houbraken M, Demeyer S, Michoel T, Audenaert P, Colle D, Pickavet M.

PLoS One. 2014 May 30;9(5):e97896. doi: 10.1371/journal.pone.0097896. eCollection 2014.

PMID:
24879305
[PubMed - in process]
Free PMC Article
6.

Subgraph queries by context-free grammars.

Sevon P, Eronen L.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-100.

PMID:
20134073
[PubMed - indexed for MEDLINE]
7.

Seeing the results of a mutation with a vertex weighted hierarchical graph.

Knisley DJ, Knisley JR.

BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S7. doi: 10.1186/1753-6561-8-S2-S7. eCollection 2014.

PMID:
25237394
[PubMed]
8.

Parallel clustering algorithm for large data sets with applications in bioinformatics.

Olman V, Mao F, Wu H, Xu Y.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):344-52. doi: 10.1109/TCBB.2007.70272.

PMID:
19407357
[PubMed - indexed for MEDLINE]
9.

Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.

Li M, Chen JE, Wang JX, Hu B, Chen G.

BMC Bioinformatics. 2008 Sep 25;9:398. doi: 10.1186/1471-2105-9-398.

PMID:
18816408
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Graph classification using signal-subgraphs: applications in statistical connectomics.

Vogelstein JT, Gray Roncal W, Vogelstein RJ, Priebe CE.

IEEE Trans Pattern Anal Mach Intell. 2013 Jul;35(7):1539-51. doi: 10.1109/TPAMI.2012.235.

PMID:
23681985
[PubMed - indexed for MEDLINE]
11.

Identification of functional modules in a PPI network by bounded diameter clustering.

Sohaee N, Forst CV.

J Bioinform Comput Biol. 2010 Dec;8(6):929-43.

PMID:
21121019
[PubMed - indexed for MEDLINE]
12.

SING: subgraph search in non-homogeneous graphs.

Di Natale R, Ferro A, Giugno R, Mongiovì M, Pulvirenti A, Shasha D.

BMC Bioinformatics. 2010 Feb 19;11:96. doi: 10.1186/1471-2105-11-96.

PMID:
20170516
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

On the centrality of vertices of molecular graphs.

Randić M, Novič M, Vračko M, Plavšić D.

J Comput Chem. 2013 Nov 5;34(29):2514-23. doi: 10.1002/jcc.23413. Epub 2013 Aug 19.

PMID:
23955387
[PubMed]
14.

Affinity learning with diffusion on tensor product graph.

Yang X, Prasad L, Latecki LJ.

IEEE Trans Pattern Anal Mach Intell. 2013 Jan;35(1):28-38.

PMID:
22392704
[PubMed - indexed for MEDLINE]
15.

Graph animals, subgraph sampling, and motif search in large networks.

Baskerville K, Grassberger P, Paczuski M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036107. Epub 2007 Sep 11.

PMID:
17930306
[PubMed]
16.

MotifCut: regulatory motifs finding with maximum density subgraphs.

Fratkin E, Naughton BT, Brutlag DL, Batzoglou S.

Bioinformatics. 2006 Jul 15;22(14):e150-7.

PMID:
16873465
[PubMed - indexed for MEDLINE]
Free Article
17.

Dominant sets and pairwise clustering.

Pavan M, Pelillo M.

IEEE Trans Pattern Anal Mach Intell. 2007 Jan;29(1):167-72.

PMID:
17108392
[PubMed - indexed for MEDLINE]
18.

An algorithm for network motif discovery in biological networks.

Qin G, Gao L.

Int J Data Min Bioinform. 2012;6(1):1-16.

PMID:
22479815
[PubMed - indexed for MEDLINE]
19.

An efficient algorithm for detecting frequent subgraphs in biological networks.

Koyutürk M, Grama A, Szpankowski W.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i200-7.

PMID:
15262800
[PubMed - indexed for MEDLINE]
Free Article
20.

Subgraph ensembles and motif discovery using an alternative heuristic for graph isomorphism.

Baskerville K, Paczuski M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Nov;74(5 Pt 1):051903. Epub 2006 Nov 3.

PMID:
17279935
[PubMed - indexed for MEDLINE]

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