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Results: 1 to 20 of 101

1.

Predicting network activity from high throughput metabolomics.

Li S, Park Y, Duraisingham S, Strobel FH, Khan N, Soltow QA, Jones DP, Pulendran B.

PLoS Comput Biol. 2013;9(7):e1003123. doi: 10.1371/journal.pcbi.1003123. Epub 2013 Jul 4.

PMID:
23861661
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Ultraperformance liquid chromatography-mass spectrometry based comprehensive metabolomics combined with pattern recognition and network analysis methods for characterization of metabolites and metabolic pathways from biological data sets.

Zhang AH, Sun H, Han Y, Yan GL, Yuan Y, Song GC, Yuan XX, Xie N, Wang XJ.

Anal Chem. 2013 Aug 6;85(15):7606-12. doi: 10.1021/ac401793d. Epub 2013 Jul 25.

PMID:
23845028
[PubMed - indexed for MEDLINE]
3.

Nontargeted elucidation of metabolic pathways using stable-isotope tracers and mass spectrometry.

Hiller K, Metallo CM, Kelleher JK, Stephanopoulos G.

Anal Chem. 2010 Aug 1;82(15):6621-8. doi: 10.1021/ac1011574.

PMID:
20608743
[PubMed - indexed for MEDLINE]
4.

Two-dimensional statistical recoupling for the identification of perturbed metabolic networks from NMR spectroscopy.

Blaise BJ, Navratil V, Domange C, Shintu L, Dumas ME, Elena-Herrmann B, Emsley L, Toulhoat P.

J Proteome Res. 2010 Sep 3;9(9):4513-20. doi: 10.1021/pr1002615.

PMID:
20590164
[PubMed - indexed for MEDLINE]
5.

xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data.

Uppal K, Soltow QA, Strobel FH, Pittard WS, Gernert KM, Yu T, Jones DP.

BMC Bioinformatics. 2013 Jan 16;14:15. doi: 10.1186/1471-2105-14-15.

PMID:
23323971
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Mass spectrometry-based metabolomics application to identify quantitative resistance-related metabolites in barley against Fusarium head blight.

Bollina V, Kumaraswamy GK, Kushalappa AC, Choo TM, Dion Y, Rioux S, Faubert D, Hamzehzarghani H.

Mol Plant Pathol. 2010 Nov;11(6):769-82. doi: 10.1111/j.1364-3703.2010.00643.x.

PMID:
21029322
[PubMed - indexed for MEDLINE]
7.

A network-based feature selection approach to identify metabolic signatures in disease.

Netzer M, Kugler KG, Müller LA, Weinberger KM, Graber A, Baumgartner C, Dehmer M.

J Theor Biol. 2012 Oct 7;310:216-22. doi: 10.1016/j.jtbi.2012.06.003. Epub 2012 Jul 4.

PMID:
22771628
[PubMed - indexed for MEDLINE]
8.

Stable isotope-labeling studies in metabolomics: new insights into structure and dynamics of metabolic networks.

Chokkathukalam A, Kim DH, Barrett MP, Breitling R, Creek DJ.

Bioanalysis. 2014 Feb;6(4):511-24. doi: 10.4155/bio.13.348. Review.

PMID:
24568354
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Towards high throughput metabolic flux analysis in plants.

Huege J, Poskar CH, Franke M, Junker BH.

Mol Biosyst. 2012 Oct;8(10):2466-9. doi: 10.1039/c2mb25068c.

PMID:
22868641
[PubMed - indexed for MEDLINE]
10.

Mass conservation and inference of metabolic networks from high-throughput mass spectrometry data.

Bandaru P, Bansal M, Nemenman I.

J Comput Biol. 2011 Feb;18(2):147-54. doi: 10.1089/cmb.2010.0222.

PMID:
21314454
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Fast alignment of fragmentation trees.

Hufsky F, Dührkop K, Rasche F, Chimani M, Böcker S.

Bioinformatics. 2012 Jun 15;28(12):i265-73. doi: 10.1093/bioinformatics/bts207.

PMID:
22689771
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

SIRIUS: decomposing isotope patterns for metabolite identification.

Böcker S, Letzel MC, Lipták Z, Pervukhin A.

Bioinformatics. 2009 Jan 15;25(2):218-24. doi: 10.1093/bioinformatics/btn603. Epub 2008 Nov 17.

PMID:
19015140
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of a metabolic reaction network from time-series data of metabolite concentrations.

Sriyudthsak K, Shiraishi F, Hirai MY.

PLoS One. 2013;8(1):e51212. doi: 10.1371/journal.pone.0051212. Epub 2013 Jan 10.

PMID:
23326311
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Metabolite identification using automated comparison of high-resolution multistage mass spectral trees.

Rojas-Cherto M, Peironcely JE, Kasper PT, van der Hooft JJ, de Vos RC, Vreeken R, Hankemeier T, Reijmers T.

Anal Chem. 2012 Jul 3;84(13):5524-34. doi: 10.1021/ac2034216. Epub 2012 Jun 22.

PMID:
22612383
[PubMed - indexed for MEDLINE]
15.

Computational analyses of spectral trees from electrospray multi-stage mass spectrometry to aid metabolite identification.

Cao M, Fraser K, Rasmussen S.

Metabolites. 2013 Oct 31;3(4):1036-50. doi: 10.3390/metabo3041036.

PMID:
24958264
[PubMed]
Free PMC Article
16.

Metabolomics and fluxomics approaches.

Cascante M, Marin S.

Essays Biochem. 2008;45:67-81. doi: 10.1042/BSE0450067. Review.

PMID:
18793124
[PubMed - indexed for MEDLINE]
17.

Metabolomics for tumor marker discovery and identification based on chromatography-mass spectrometry.

Yin P, Xu G.

Expert Rev Mol Diagn. 2013 May;13(4):339-48. doi: 10.1586/erm.13.23.

PMID:
23638817
[PubMed - indexed for MEDLINE]
18.

Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.

Krumsiek J, Suhre K, Evans AM, Mitchell MW, Mohney RP, Milburn MV, Wägele B, Römisch-Margl W, Illig T, Adamski J, Gieger C, Theis FJ, Kastenmüller G.

PLoS Genet. 2012;8(10):e1003005. doi: 10.1371/journal.pgen.1003005. Epub 2012 Oct 18.

PMID:
23093944
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A novel deconvolution method for modeling UDP-N-acetyl-D-glucosamine biosynthetic pathways based on (13)C mass isotopologue profiles under non-steady-state conditions.

Moseley HN, Lane AN, Belshoff AC, Higashi RM, Fan TW.

BMC Biol. 2011 May 31;9:37. doi: 10.1186/1741-7007-9-37.

PMID:
21627825
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Tools for the functional interpretation of metabolomic experiments.

Chagoyen M, Pazos F.

Brief Bioinform. 2013 Nov;14(6):737-44. doi: 10.1093/bib/bbs055. Epub 2012 Oct 14.

PMID:
23063930
[PubMed - indexed for MEDLINE]
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