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Items: 1 to 20 of 189

1.

RACER: Rapid and accurate correction of errors in reads.

Ilie L, Molnar M.

Bioinformatics. 2013 Oct 1;29(19):2490-3. doi: 10.1093/bioinformatics/btt407. Epub 2013 Jul 12.

2.

HiTEC: accurate error correction in high-throughput sequencing data.

Ilie L, Fazayeli F, Ilie S.

Bioinformatics. 2011 Feb 1;27(3):295-302. doi: 10.1093/bioinformatics/btq653. Epub 2010 Nov 26.

3.

BLESS: bloom filter-based error correction solution for high-throughput sequencing reads.

Heo Y, Wu XL, Chen D, Ma J, Hwu WM.

Bioinformatics. 2014 May 15;30(10):1354-62. doi: 10.1093/bioinformatics/btu030. Epub 2014 Jan 21.

4.

Blue: correcting sequencing errors using consensus and context.

Greenfield P, Duesing K, Papanicolaou A, Bauer DC.

Bioinformatics. 2014 Oct;30(19):2723-32. doi: 10.1093/bioinformatics/btu368. Epub 2014 Jun 11.

5.

pIRS: Profile-based Illumina pair-end reads simulator.

Hu X, Yuan J, Shi Y, Lu J, Liu B, Li Z, Chen Y, Mu D, Zhang H, Li N, Yue Z, Bai F, Li H, Fan W.

Bioinformatics. 2012 Jun 1;28(11):1533-5. doi: 10.1093/bioinformatics/bts187. Epub 2012 Apr 15.

6.

EC: an efficient error correction algorithm for short reads.

Saha S, Rajasekaran S.

BMC Bioinformatics. 2015;16 Suppl 17:S2. doi: 10.1186/1471-2105-16-S17-S2. Epub 2015 Dec 7.

7.

Repeat-aware modeling and correction of short read errors.

Yang X, Aluru S, Dorman KS.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S52. doi: 10.1186/1471-2105-12-S1-S52.

8.

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.

Boisvert S, Laviolette F, Corbeil J.

J Comput Biol. 2010 Nov;17(11):1519-33. doi: 10.1089/cmb.2009.0238. Epub 2010 Oct 20.

9.

Identification and correction of systematic error in high-throughput sequence data.

Meacham F, Boffelli D, Dhahbi J, Martin DI, Singer M, Pachter L.

BMC Bioinformatics. 2011 Nov 21;12:451. doi: 10.1186/1471-2105-12-451.

10.

QuorUM: An Error Corrector for Illumina Reads.

Marçais G, Yorke JA, Zimin A.

PLoS One. 2015 Jun 17;10(6):e0130821. doi: 10.1371/journal.pone.0130821. eCollection 2015.

11.

Ψ-RA: a parallel sparse index for genomic read alignment.

Oğuzhan Külekci M, Hon WK, Shah R, Scott Vitter J, Xu B.

BMC Genomics. 2011;12 Suppl 2:S7. doi: 10.1186/1471-2164-12-S2-S7. Epub 2011 Jul 27.

12.

LoRDEC: accurate and efficient long read error correction.

Salmela L, Rivals E.

Bioinformatics. 2014 Dec 15;30(24):3506-14. doi: 10.1093/bioinformatics/btu538. Epub 2014 Aug 26.

13.

Effects of error-correction of heterozygous next-generation sequencing data.

Fujimoto M, Bodily PM, Okuda N, Clement MJ, Snell Q.

BMC Bioinformatics. 2014;15 Suppl 7:S3. doi: 10.1186/1471-2105-15-S7-S3. Epub 2014 May 28.

14.

Fiona: a parallel and automatic strategy for read error correction.

Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H.

Bioinformatics. 2014 Sep 1;30(17):i356-63. doi: 10.1093/bioinformatics/btu440.

15.

Gossamer--a resource-efficient de novo assembler.

Conway T, Wazny J, Bromage A, Zobel J, Beresford-Smith B.

Bioinformatics. 2012 Jul 15;28(14):1937-8. doi: 10.1093/bioinformatics/bts297. Epub 2012 May 18.

16.

Pollux: platform independent error correction of single and mixed genomes.

Marinier E, Brown DG, McConkey BJ.

BMC Bioinformatics. 2015 Jan 16;16:10. doi: 10.1186/s12859-014-0435-6.

17.

Levenshtein error-correcting barcodes for multiplexed DNA sequencing.

Buschmann T, Bystrykh LV.

BMC Bioinformatics. 2013 Sep 11;14:272. doi: 10.1186/1471-2105-14-272.

18.

Efficient alignment of pyrosequencing reads for re-sequencing applications.

Fernandes F, da Fonseca PG, Russo LM, Oliveira AL, Freitas AT.

BMC Bioinformatics. 2011 May 16;12:163. doi: 10.1186/1471-2105-12-163.

19.

Correction of sequencing errors in a mixed set of reads.

Salmela L.

Bioinformatics. 2010 May 15;26(10):1284-90. doi: 10.1093/bioinformatics/btq151. Epub 2010 Apr 8.

20.

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.

Harris EY, Ponts N, Le Roch KG, Lonardi S.

Bioinformatics. 2012 Jul 1;28(13):1795-6. doi: 10.1093/bioinformatics/bts264. Epub 2012 May 3.

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