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Results: 1 to 20 of 91

1.

Fast half-sibling population reconstruction: theory and algorithms.

Dexter D, Brown DG.

Algorithms Mol Biol. 2013 Jul 12;8(1):20. doi: 10.1186/1748-7188-8-20.

PMID:
23849037
[PubMed]
Free PMC Article
2.

KINALYZER, a computer program for reconstructing sibling groups.

Ashley MV, Caballero IC, Chaovalitwongse W, Dasgupta B, Govindan P, Sheikh SI, Berger-Wolf TY.

Mol Ecol Resour. 2009 Jul;9(4):1127-31. doi: 10.1111/j.1755-0998.2009.02562.x. Epub 2009 Feb 25.

PMID:
21564851
[PubMed]
3.

A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem.

Almudevar A, Anderson EC.

Mol Ecol Resour. 2012 Jan;12(1):164-78. doi: 10.1111/j.1755-0998.2011.03061.x. Epub 2011 Aug 26.

PMID:
21883980
[PubMed - indexed for MEDLINE]
4.

Modified SIMPSON O(n3) algorithm for the full sibship reconstruction problem.

Konovalov DA, Bajema N, Litow B.

Bioinformatics. 2005 Oct 15;21(20):3912-7. Epub 2005 Aug 23.

PMID:
16118259
[PubMed - indexed for MEDLINE]
Free Article
5.

Reconstructing sibling relationships in wild populations.

Berger-Wolf TY, Sheikh SI, DasGupta B, Ashley MV, Caballero IC, Chaovalitwongse W, Putrevu SL.

Bioinformatics. 2007 Jul 1;23(13):i49-56.

PMID:
17646334
[PubMed - indexed for MEDLINE]
Free Article
6.

Error tolerant sibship reconstruction in wild populations.

Sheikh SI, Berger-Wolf TY, Ashley MV, Caballero IC, Chaovalitwongse W, DasGupta B.

Comput Syst Bioinformatics Conf. 2008;7:273-84.

PMID:
19642287
[PubMed - indexed for MEDLINE]
Free Article
7.

Robust relationship inference in genome-wide association studies.

Manichaikul A, Mychaleckyj JC, Rich SS, Daly K, Sale M, Chen WM.

Bioinformatics. 2010 Nov 15;26(22):2867-73. doi: 10.1093/bioinformatics/btq559. Epub 2010 Oct 5.

PMID:
20926424
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Combinatorial reconstruction of half-sibling groups from microsatellite data.

Sheikh SI, Berger-Wolf TY, Khokhar AA, Caballero IC, Ashley MV, Chaovalitwongse W, Chou CA, Dasgupta B.

J Bioinform Comput Biol. 2010 Apr;8(2):337-56.

PMID:
20401949
[PubMed - indexed for MEDLINE]
9.

Computing the minimum recombinant haplotype configuration from incomplete genotype data on a pedigree by integer linear programming.

Li J, Jiang T.

J Comput Biol. 2005 Jul-Aug;12(6):719-39.

PMID:
16108713
[PubMed - indexed for MEDLINE]
10.

Screening synteny blocks in pairwise genome comparisons through integer programming.

Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M.

BMC Bioinformatics. 2011 Apr 18;12:102. doi: 10.1186/1471-2105-12-102.

PMID:
21501495
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Unravelling first-generation pedigrees in wild endangered salmon populations using molecular genetic markers.

Herbinger CM, O'reilly PT, Verspoor E.

Mol Ecol. 2006 Jul;15(8):2261-75.

PMID:
16780439
[PubMed - indexed for MEDLINE]
12.

Efficient inference of haplotypes from genotypes on a pedigree.

Li J, Jiang T.

J Bioinform Comput Biol. 2003 Apr;1(1):41-69.

PMID:
15290781
[PubMed - indexed for MEDLINE]
13.

A fast and accurate algorithm for single individual haplotyping.

Xie M, Wang J, Jiang T.

BMC Syst Biol. 2012;6 Suppl 2:S8. doi: 10.1186/1752-0509-6-S2-S8. Epub 2012 Dec 12.

PMID:
23282221
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods.

Onogi A, Nurimoto M, Morita M.

BMC Bioinformatics. 2011 Jun 28;12:263. doi: 10.1186/1471-2105-12-263.

PMID:
21708038
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets.

Raj A, Stephens M, Pritchard JK.

Genetics. 2014 Apr 2;197(2):573-589. [Epub ahead of print]

PMID:
24700103
[PubMed - as supplied by publisher]
Free PMC Article
16.

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.

Zoppoli P, Morganella S, Ceccarelli M.

BMC Bioinformatics. 2010 Mar 25;11:154. doi: 10.1186/1471-2105-11-154.

PMID:
20338053
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees.

Hill T, Nordström KJ, Thollesson M, Säfström TM, Vernersson AK, Fredriksson R, Schiöth HB.

BMC Evol Biol. 2010 Feb 13;10:42. doi: 10.1186/1471-2148-10-42.

PMID:
20152048
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

FastHap: fast and accurate single individual haplotype reconstruction using fuzzy conflict graphs.

Mazrouee S, Wang W.

Bioinformatics. 2014 Sep 1;30(17):i371-i378. doi: 10.1093/bioinformatics/btu442.

PMID:
25161222
[PubMed - in process]
Free PMC Article
19.

A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree.

Lai EY, Wang WB, Jiang T, Wu KP.

BMC Bioinformatics. 2012;13 Suppl 17:S19. doi: 10.1186/1471-2105-13-S17-S19. Epub 2012 Dec 13.

PMID:
23281626
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

[Algorithms of likelihood ratio for discriminating full sibling from half sibling].

Zhao SM, Zhang LN, Zhang SH, Zhang N, Zhao ZM, Li CT.

Fa Yi Xue Za Zhi. 2012 Apr;28(2):104-8. Chinese.

PMID:
22619804
[PubMed - indexed for MEDLINE]

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