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Results: 1 to 20 of 143

1.

A predictive factor of the quality of microarray comparative genomic hybridization analysis for formalin-fixed paraffin-embedded archival tissue.

Nakao K, Oikawa M, Arai J, Mussazhanova Z, Kondo H, Shichijo K, Nakashima M, Hayashi T, Yoshiura K, Hatachi T, Nagayasu T.

Diagn Mol Pathol. 2013 Sep;22(3):174-80. doi: 10.1097/PDM.0b013e31828191de.

PMID:
23846445
[PubMed - indexed for MEDLINE]
2.

Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells.

Johnson NA, Hamoudi RA, Ichimura K, Liu L, Pearson DM, Collins VP, Du MQ.

Lab Invest. 2006 Sep;86(9):968-78. Epub 2006 Jun 5.

PMID:
16751780
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Significance of genomic instability in breast cancer in atomic bomb survivors: analysis of microarray-comparative genomic hybridization.

Oikawa M, Yoshiura K, Kondo H, Miura S, Nagayasu T, Nakashima M.

Radiat Oncol. 2011 Dec 7;6:168. doi: 10.1186/1748-717X-6-168.

PMID:
22152285
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide comparison of paired fresh frozen and formalin-fixed paraffin-embedded gliomas by custom BAC and oligonucleotide array comparative genomic hybridization: facilitating analysis of archival gliomas.

Mohapatra G, Engler DA, Starbuck KD, Kim JC, Bernay DC, Scangas GA, Rousseau A, Batchelor TT, Betensky RA, Louis DN.

Acta Neuropathol. 2011 Apr;121(4):529-43. doi: 10.1007/s00401-010-0773-z. Epub 2010 Nov 16.

PMID:
21080181
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Sample processing considerations for detecting copy number changes in formalin-fixed, paraffin-embedded tissues.

Jacobs S.

Cold Spring Harb Protoc. 2012 Nov 1;2012(11):1195-1202. doi: 10.1101/pdb.ip071753.

PMID:
23118355
[PubMed - indexed for MEDLINE]
6.

High quality genomic copy number data from archival formalin-fixed paraffin-embedded leiomyosarcoma: optimisation of universal linkage system labelling.

Salawu A, Ul-Hassan A, Hammond D, Fernando M, Reed M, Sisley K.

PLoS One. 2012;7(11):e50415. doi: 10.1371/journal.pone.0050415. Epub 2012 Nov 29.

PMID:
23209738
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

High-resolution copy number profiling by array CGH using DNA isolated from formalin-fixed, paraffin-embedded tissues.

van Essen HF, Ylstra B.

Methods Mol Biol. 2012;838:329-41. doi: 10.1007/978-1-61779-507-7_16.

PMID:
22228020
[PubMed - indexed for MEDLINE]
8.

Genomic analysis by oligonucleotide array Comparative Genomic Hybridization utilizing formalin-fixed, paraffin-embedded tissues.

Savage SJ, Hostetter G.

Methods Mol Biol. 2011;700:185-98. doi: 10.1007/978-1-61737-954-3_13.

PMID:
21204035
[PubMed - indexed for MEDLINE]
9.

Automated array-CGH optimized for archival formalin-fixed, paraffin-embedded tumor material.

Joosse SA, van Beers EH, Nederlof PM.

BMC Cancer. 2007 Mar 7;7:43.

PMID:
17343727
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evaluating the repair of DNA derived from formalin-fixed paraffin-embedded tissues prior to genomic profiling by SNP-CGH analysis.

Hosein AN, Song S, McCart Reed AE, Jayanthan J, Reid LE, Kutasovic JR, Cummings MC, Waddell N, Lakhani SR, Chenevix-Trench G, Simpson PT.

Lab Invest. 2013 Jun;93(6):701-10. doi: 10.1038/labinvest.2013.54. Epub 2013 Apr 8.

PMID:
23568031
[PubMed - indexed for MEDLINE]
Free Article
11.

CGH arrays compared for DNA isolated from formalin-fixed, paraffin-embedded material.

Krijgsman O, Israeli D, Haan JC, van Essen HF, Smeets SJ, Eijk PP, Steenbergen RD, Kok K, Tejpar S, Meijer GA, Ylstra B.

Genes Chromosomes Cancer. 2012 Apr;51(4):344-52. doi: 10.1002/gcc.21920. Epub 2011 Dec 8.

PMID:
22162309
[PubMed - indexed for MEDLINE]
12.

Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples.

Hostetter G, Kim SY, Savage S, Gooden GC, Barrett M, Zhang J, Alla L, Watanabe A, Einspahr J, Prasad A, Nickoloff BJ, Carpten J, Trent J, Alberts D, Bittner M.

Nucleic Acids Res. 2010 Jan;38(2):e9. doi: 10.1093/nar/gkp881. Epub 2009 Oct 29.

PMID:
19875416
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples.

Nasri S, Anjomshoaa A, Song S, Guilford P, McNoe L, Black M, Phillips V, Reeve A, Humar B.

Cancer Genet Cytogenet. 2010 Apr 1;198(1):1-6. doi: 10.1016/j.cancergencyto.2009.12.002.

PMID:
20303007
[PubMed - indexed for MEDLINE]
14.

Data analysis considerations for detecting copy number changes in formalin-fixed, paraffin-embedded tissues.

Jacobs S.

Cold Spring Harb Protoc. 2012 Nov 1;2012(11):1203-9. doi: 10.1101/pdb.ip071761.

PMID:
23118356
[PubMed - indexed for MEDLINE]
15.

The utility and limitation of single nucleotide polymorphism analysis on whole genome amplified mesenchymal tumour DNA in formalin fixed tumour samples.

Liang CW, Lee YS, Marino-Enriquez A, Tsui K, Huang SH.

Pathology. 2012 Jan;44(1):33-41. doi: 10.1097/PAT.0b013e32834e411e.

PMID:
22157688
[PubMed - indexed for MEDLINE]
16.

Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.

Aviel-Ronen S, Qi Zhu C, Coe BP, Liu N, Watson SK, Lam WL, Tsao MS.

BMC Genomics. 2006 Dec 12;7:312.

PMID:
17156491
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Microarray-based CGH and copy number analysis of FFPE samples.

Al-Mulla F.

Methods Mol Biol. 2011;724:131-45. doi: 10.1007/978-1-61779-055-3_9.

PMID:
21370011
[PubMed - indexed for MEDLINE]
18.

Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.

Mittempergher L, de Ronde JJ, Nieuwland M, Kerkhoven RM, Simon I, Rutgers EJ, Wessels LF, Van't Veer LJ.

PLoS One. 2011 Feb 11;6(2):e17163. doi: 10.1371/journal.pone.0017163.

PMID:
21347257
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue.

Jasmine F, Rahaman R, Roy S, Raza M, Paul R, Rakibuz-Zaman M, Paul-Brutus R, Dodsworth C, Kamal M, Ahsan H, Kibriya MG.

BMC Res Notes. 2012 Feb 22;5:117. doi: 10.1186/1756-0500-5-117.

PMID:
22357164
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.

Little SE, Vuononvirta R, Reis-Filho JS, Natrajan R, Iravani M, Fenwick K, Mackay A, Ashworth A, Pritchard-Jones K, Jones C.

Genomics. 2006 Feb;87(2):298-306. Epub 2005 Nov 2.

PMID:
16271290
[PubMed - indexed for MEDLINE]
Free Article

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