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RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping.

Paritosh K, Yadava SK, Gupta V, Panjabi-Massand P, Sodhi YS, Pradhan AK, Pental D.

BMC Genomics. 2013 Jul 9;14:463. doi: 10.1186/1471-2164-14-463.


Tetralocular ovary and high silique width in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis.

Yadava SK, Paritosh K, Panjabi-Massand P, Gupta V, Chandra A, Sodhi YS, Pradhan AK, Pental D.

Theor Appl Genet. 2014 Nov;127(11):2359-69. doi: 10.1007/s00122-014-2382-z. Epub 2014 Sep 10.


Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.

Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN.

G3 (Bethesda). 2014 Aug 12;4(11):2065-78. doi: 10.1534/g3.114.012526.


Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa.

Xu J, Qian X, Wang X, Li R, Cheng X, Yang Y, Fu J, Zhang S, King GJ, Wu J, Liu K.

BMC Genomics. 2010 Oct 22;11:594. doi: 10.1186/1471-2164-11-594.


Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa.

Tong C, Wang X, Yu J, Wu J, Li W, Huang J, Dong C, Hua W, Liu S.

BMC Genomics. 2013 Oct 7;14:689. doi: 10.1186/1471-2164-14-689.


Development of a high density integrated reference genetic linkage map for the multinational Brassica rapa Genome Sequencing Project.

Li X, Ramchiary N, Choi SR, Van Nguyen D, Hossain MJ, Yang HK, Lim YP.

Genome. 2010 Nov;53(11):939-47. doi: 10.1139/G10-054.


Construction of a genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa.

Chung H, Jeong YM, Mun JH, Lee SS, Chung WH, Yu HJ.

Mol Genet Genomics. 2014 Apr;289(2):149-60. doi: 10.1007/s00438-013-0798-9. Epub 2013 Dec 11.


Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.


Diversity array technology markers: genetic diversity analyses and linkage map construction in rapeseed (Brassica napus L.).

Raman H, Raman R, Nelson MN, Aslam MN, Rajasekaran R, Wratten N, Cowling WA, Kilian A, Sharpe AG, Schondelmaier J.

DNA Res. 2012;19(1):51-65. doi: 10.1093/dnares/dsr041. Epub 2011 Dec 22.


The reference genetic linkage map for the multinational Brassica rapa genome sequencing project.

Choi SR, Teakle GR, Plaha P, Kim JH, Allender CJ, Beynon E, Piao ZY, Soengas P, Han TH, King GJ, Barker GC, Hand P, Lydiate DJ, Batley J, Edwards D, Koo DH, Bang JW, Park BS, Lim YP.

Theor Appl Genet. 2007 Oct;115(6):777-92. Epub 2007 Jul 24.


Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives.

Ramchiary N, Nguyen VD, Li X, Hong CP, Dhandapani V, Choi SR, Yu G, Piao ZY, Lim YP.

DNA Res. 2011 Oct;18(5):305-20. doi: 10.1093/dnares/dsr017. Epub 2011 Jul 17.


Genome-wide discovery of DNA polymorphism in Brassica rapa.

Park S, Yu HJ, Mun JH, Lee SC.

Mol Genet Genomics. 2010 Feb;283(2):135-45. doi: 10.1007/s00438-009-0504-0. Epub 2009 Dec 19.


A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly.

Wang Y, Sun S, Liu B, Wang H, Deng J, Liao Y, Wang Q, Cheng F, Wang X, Wu J.

BMC Genomics. 2011 May 14;12:239. doi: 10.1186/1471-2164-12-239.


Structural and functional comparative mapping between the Brassica A genomes in allotetraploid Brassica napus and diploid Brassica rapa.

Jiang C, Ramchiary N, Ma Y, Jin M, Feng J, Li R, Wang H, Long Y, Choi SR, Zhang C, Cowling WA, Park BS, Lim YP, Meng J.

Theor Appl Genet. 2011 Oct;123(6):927-41. doi: 10.1007/s00122-011-1637-1. Epub 2011 Jul 15.


A rich TILLING resource for studying gene function in Brassica rapa.

Stephenson P, Baker D, Girin T, Perez A, Amoah S, King GJ, Ƙstergaard L.

BMC Plant Biol. 2010 Apr 9;10:62. doi: 10.1186/1471-2229-10-62.


Discovery of pod shatter-resistant associated SNPs by deep sequencing of a representative library followed by bulk segregant analysis in rapeseed.

Hu Z, Hua W, Huang S, Yang H, Zhan G, Wang X, Liu G, Wang H.

PLoS One. 2012;7(4):e34253. doi: 10.1371/journal.pone.0034253. Epub 2012 Apr 17.


Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa.

Suwabe K, Morgan C, Bancroft I.

Genome. 2008 Mar;51(3):169-76. doi: 10.1139/G07-113.


QTL mapping of leafy heads by genome resequencing in the RIL population of Brassica rapa.

Yu X, Wang H, Zhong W, Bai J, Liu P, He Y.

PLoS One. 2013 Oct 28;8(10):e76059. doi: 10.1371/journal.pone.0076059. eCollection 2013.


Development and validation of genic-SSR markers in sesame by RNA-seq.

Zhang H, Wei L, Miao H, Zhang T, Wang C.

BMC Genomics. 2012 Jul 16;13:316. doi: 10.1186/1471-2164-13-316.

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