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Results: 1 to 20 of 118

1.

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.

Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.

Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4.

PMID:
23826978
[PubMed - indexed for MEDLINE]
2.

PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K.

Plant Cell. 2009 Dec;21(12):3718-31. doi: 10.1105/tpc.109.071506. Epub 2009 Dec 29.

PMID:
20040540
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.

Lopez D, Casero D, Cokus SJ, Merchant SS, Pellegrini M.

BMC Bioinformatics. 2011 Jul 12;12:282. doi: 10.1186/1471-2105-12-282.

PMID:
21749710
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dissecting plant genomes with the PLAZA comparative genomics platform.

Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K.

Plant Physiol. 2012 Feb;158(2):590-600. doi: 10.1104/pp.111.189514. Epub 2011 Dec 23.

PMID:
22198273
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ChloroplastDB: the Chloroplast Genome Database.

Cui L, Veeraraghavan N, Richter A, Wall K, Jansen RK, Leebens-Mack J, Makalowska I, dePamphilis CW.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D692-6.

PMID:
16381961
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Phytozome: a comparative platform for green plant genomics.

Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. doi: 10.1093/nar/gkr944. Epub 2011 Nov 22.

PMID:
22110026
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

PMID:
19788737
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Genome Database for Rosaceae (GDR): year 10 update.

Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Bombarely A, Cho I, Ru S, Evans K, Peace C, Abbott AG, Mueller LA, Olmstead MA, Main D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1237-44. doi: 10.1093/nar/gkt1012. Epub 2013 Nov 12.

PMID:
24225320
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution.

Chan CX, Reyes-Prieto A, Bhattacharya D.

PLoS One. 2011;6(12):e29138. doi: 10.1371/journal.pone.0029138. Epub 2011 Dec 14.

PMID:
22195008
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID:
17445272
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MorusDB: a resource for mulberry genomics and genome biology.

Li T, Qi X, Zeng Q, Xiang Z, He N.

Database (Oxford). 2014 Jun 11;2014. pii: bau054. doi: 10.1093/database/bau054. Print 2014.

PMID:
24923822
[PubMed - indexed for MEDLINE]
Free Article
12.

Kerfuffle: a web tool for multi-species gene colocalization analysis.

Aboukhalil R, Fendler B, Atwal GS.

BMC Bioinformatics. 2013 Jan 17;14:22. doi: 10.1186/1471-2105-14-22.

PMID:
23327649
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.

PMID:
16236172
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide analysis of the rice and Arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining.

Boutrot F, Chantret N, Gautier MF.

BMC Genomics. 2008 Feb 21;9:86. doi: 10.1186/1471-2164-9-86.

PMID:
18291034
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Update of the Diatom EST Database: a new tool for digital transcriptomics.

Maheswari U, Mock T, Armbrust EV, Bowler C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D1001-5. doi: 10.1093/nar/gkn905. Epub 2008 Nov 23.

PMID:
19029140
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A general pipeline for the development of anchor markers for comparative genomics in plants.

Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L.

BMC Genomics. 2006 Aug 14;7:207.

PMID:
16907970
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

BRAD, the genetics and genomics database for Brassica plants.

Cheng F, Liu S, Wu J, Fang L, Sun S, Liu B, Li P, Hua W, Wang X.

BMC Plant Biol. 2011 Oct 13;11:136. doi: 10.1186/1471-2229-11-136.

PMID:
21995777
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.

Chapman MA, Donaldson IJ, Gilbert J, Grafham D, Rogers J, Green AR, Gƶttgens B.

Genome Res. 2004 Feb;14(2):313-8. Epub 2004 Jan 12.

PMID:
14718377
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

PMID:
16351742
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome properties of the diatom Phaeodactylum tricornutum.

Scala S, Carels N, Falciatore A, Chiusano ML, Bowler C.

Plant Physiol. 2002 Jul;129(3):993-1002.

PMID:
12114555
[PubMed - indexed for MEDLINE]
Free PMC Article

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