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Results: 1 to 20 of 98

1.

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs).

Faircloth BC, Sorenson L, Santini F, Alfaro ME.

PLoS One. 2013 Jun 18;8(6):e65923. Print 2013.

PMID:
23824177
[PubMed - as supplied by publisher]
Free PMC Article
2.

Resolution of ray-finned fish phylogeny and timing of diversification.

Near TJ, Eytan RI, Dornburg A, Kuhn KL, Moore JA, Davis MP, Wainwright PC, Friedman M, Smith WL.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13698-703. doi: 10.1073/pnas.1206625109. Epub 2012 Aug 6.

PMID:
22869754
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC.

Syst Biol. 2012 Oct;61(5):717-26. doi: 10.1093/sysbio/sys004. Epub 2012 Jan 9.

PMID:
22232343
[PubMed - indexed for MEDLINE]
4.

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing.

McCormack JE, Harvey MG, Faircloth BC, Crawford NG, Glenn TC, Brumfield RT.

PLoS One. 2013;8(1):e54848. doi: 10.1371/journal.pone.0054848. Epub 2013 Jan 29.

PMID:
23382987
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gene trees, species trees, and morphology converge on a similar phylogeny of living gars (Actinopterygii: Holostei: Lepisosteidae), an ancient clade of ray-finned fishes.

Wright JJ, David SR, Near TJ.

Mol Phylogenet Evol. 2012 Jun;63(3):848-56. doi: 10.1016/j.ympev.2012.02.033. Epub 2012 Mar 14.

PMID:
22445447
[PubMed - indexed for MEDLINE]
6.

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC.

Genome Res. 2012 Apr;22(4):746-54. doi: 10.1101/gr.125864.111. Epub 2011 Dec 29.

PMID:
22207614
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study.

Li C, Ortí G, Zhang G, Lu G.

BMC Evol Biol. 2007 Mar 20;7:44.

PMID:
17374158
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales.

Smith BT, Harvey MG, Faircloth BC, Glenn TC, Brumfield RT.

Syst Biol. 2014 Jan 1;63(1):83-95. doi: 10.1093/sysbio/syt061. Epub 2013 Sep 10.

PMID:
24021724
[PubMed - indexed for MEDLINE]
9.

Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci.

Li C, Lu G, Ortí G.

Syst Biol. 2008 Aug;57(4):519-39. doi: 10.1080/10635150802206883.

PMID:
18622808
[PubMed - indexed for MEDLINE]
10.

The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond.

Wainwright PC, Smith WL, Price SA, Tang KL, Sparks JS, Ferry LA, Kuhn KL, Eytan RI, Near TJ.

Syst Biol. 2012 Dec 1;61(6):1001-27. doi: 10.1093/sysbio/sys060. Epub 2012 Jun 27.

PMID:
22744773
[PubMed - indexed for MEDLINE]
11.

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor.

Wang J, Lee AP, Kodzius R, Brenner S, Venkatesh B.

Mol Biol Evol. 2009 Mar;26(3):487-90. doi: 10.1093/molbev/msn278. Epub 2008 Dec 3.

PMID:
19052148
[PubMed - indexed for MEDLINE]
Free Article
12.

Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii).

Zou M, Guo B, Tao W, Arratia G, He S.

Sci Rep. 2012;2:665. Epub 2012 Sep 18.

PMID:
22993690
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Observations on the radiation of lobe-finned fishes, ray-finned fishes, and cartilaginous fishes: phylogeny of the opioid/orphanin gene family and the 2R hypothesis.

Dores RM, Majeed Q, Komorowski L.

Gen Comp Endocrinol. 2011 Jan 15;170(2):253-64. doi: 10.1016/j.ygcen.2010.09.023. Epub 2010 Oct 16. Review.

PMID:
20937278
[PubMed - indexed for MEDLINE]
14.

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes.

Kikugawa K, Katoh K, Kuraku S, Sakurai H, Ishida O, Iwabe N, Miyata T.

BMC Biol. 2004 Mar 11;2:3.

PMID:
15070407
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolutionary growth process of highly conserved sequences in vertebrate genomes.

Ishibashi M, Noda AO, Sakate R, Imanishi T.

Gene. 2012 Aug 1;504(1):1-5. doi: 10.1016/j.gene.2012.05.003. Epub 2012 May 9.

PMID:
22580082
[PubMed - indexed for MEDLINE]
16.

A new time-scale for ray-finned fish evolution.

Hurley IA, Mueller RL, Dunn KA, Schmidt EJ, Friedman M, Ho RK, Prince VE, Yang Z, Thomas MG, Coates MI.

Proc Biol Sci. 2007 Feb 22;274(1609):489-98.

PMID:
17476768
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gnathostome phylogenomics utilizing lungfish EST sequences.

Hallström BM, Janke A.

Mol Biol Evol. 2009 Feb;26(2):463-71. doi: 10.1093/molbev/msn271. Epub 2008 Nov 24.

PMID:
19029191
[PubMed - indexed for MEDLINE]
Free Article
18.

Characterizing a proopiomelanocortin cDNA cloned from the brain of the Bichir, Polypterus senegalus: evaluating phylogenetic relationships among ray-finned fish.

Bagrosky B, Lecaude S, Danielson PB, Dores RM.

Gen Comp Endocrinol. 2003 Dec;134(3):339-46.

PMID:
14636641
[PubMed - indexed for MEDLINE]
19.

The tree of life and a new classification of bony fishes.

Betancur-R R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton Ii JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G.

PLoS Curr. 2013 Apr 18;5. pii: ecurrents.tol.53ba26640df0ccaee75bb165c8c26288. doi: 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.

PMID:
23653398
[PubMed]
Free PMC Article
20.

Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes.

Santini F, Harmon LJ, Carnevale G, Alfaro ME.

BMC Evol Biol. 2009 Aug 8;9:194. doi: 10.1186/1471-2148-9-194.

PMID:
19664233
[PubMed - indexed for MEDLINE]
Free PMC Article

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