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Results: 1 to 20 of 104

1.

Dynamical modeling and analysis of large cellular regulatory networks.

Bérenguier D, Chaouiya C, Monteiro PT, Naldi A, Remy E, Thieffry D, Tichit L.

Chaos. 2013 Jun;23(2):025114. doi: 10.1063/1.4809783.

PMID:
23822512
[PubMed - indexed for MEDLINE]
2.

Dynamic simulation of regulatory networks using SQUAD.

Di Cara A, Garg A, De Micheli G, Xenarios I, Mendoza L.

BMC Bioinformatics. 2007 Nov 26;8:462.

PMID:
18039375
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analysis and characterization of asynchronous state transition graphs using extremal states.

Lorenz T, Siebert H, Bockmayr A.

Bull Math Biol. 2013 Jun;75(6):920-38. doi: 10.1007/s11538-012-9782-5. Epub 2012 Oct 19.

PMID:
23081730
[PubMed - indexed for MEDLINE]
4.

A method for the generation of standardized qualitative dynamical systems of regulatory networks.

Mendoza L, Xenarios I.

Theor Biol Med Model. 2006 Mar 16;3:13.

PMID:
16542429
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Modeling the role of IL-2 in the interplay between CD4+ helper and regulatory T cells: assessing general dynamical properties.

García-Martínez K, León K.

J Theor Biol. 2010 Feb 21;262(4):720-32. doi: 10.1016/j.jtbi.2009.10.025. Epub 2009 Oct 28.

PMID:
19878686
[PubMed - indexed for MEDLINE]
6.

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.

Fauré A, Naldi A, Chaouiya C, Thieffry D.

Bioinformatics. 2006 Jul 15;22(14):e124-31.

PMID:
16873462
[PubMed - indexed for MEDLINE]
Free Article
7.

A robust model to describe the differentiation of T-helper cells.

Mendoza L, Pardo F.

Theory Biosci. 2010 Dec;129(4):283-93. doi: 10.1007/s12064-010-0112-x. Epub 2010 Oct 5.

PMID:
20922578
[PubMed - indexed for MEDLINE]
8.

Transcriptional control networks of cell differentiation: insights from helper T lymphocytes.

Mariani L, Löhning M, Radbruch A, Höfer T.

Prog Biophys Mol Biol. 2004 Sep;86(1):45-76.

PMID:
15261525
[PubMed - indexed for MEDLINE]
9.

Diversity and plasticity of Th cell types predicted from regulatory network modelling.

Naldi A, Carneiro J, Chaouiya C, Thieffry D.

PLoS Comput Biol. 2010 Sep 2;6(9):e1000912. doi: 10.1371/journal.pcbi.1000912.

PMID:
20824124
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The regulatory network that controls the differentiation of T lymphocytes.

Martínez-Sosa P, Mendoza L.

Biosystems. 2013 Aug;113(2):96-103. doi: 10.1016/j.biosystems.2013.05.007. Epub 2013 Jun 4.

PMID:
23743337
[PubMed - indexed for MEDLINE]
11.

Analysis of discrete bioregulatory networks using symbolic steady states.

Siebert H.

Bull Math Biol. 2011 Apr;73(4):873-98. doi: 10.1007/s11538-010-9609-1. Epub 2010 Dec 18.

PMID:
21170598
[PubMed - indexed for MEDLINE]
12.

A description of dynamical graphs associated to elementary regulatory circuits.

Remy E, Mossé B, Chaouiya C, Thieffry D.

Bioinformatics. 2003 Oct;19 Suppl 2:ii172-8.

PMID:
14534187
[PubMed - indexed for MEDLINE]
Free Article
13.

A methodology for the structural and functional analysis of signaling and regulatory networks.

Klamt S, Saez-Rodriguez J, Lindquist JA, Simeoni L, Gilles ED.

BMC Bioinformatics. 2006 Feb 7;7:56.

PMID:
16464248
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Implicit methods for qualitative modeling of gene regulatory networks.

Garg A, Mohanram K, De Micheli G, Xenarios I.

Methods Mol Biol. 2012;786:397-443. doi: 10.1007/978-1-61779-292-2_22.

PMID:
21938638
[PubMed - indexed for MEDLINE]
15.

Stochastic Boolean networks: an efficient approach to modeling gene regulatory networks.

Liang J, Han J.

BMC Syst Biol. 2012 Aug 28;6:113. doi: 10.1186/1752-0509-6-113.

PMID:
22929591
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
17.

Synchronous versus asynchronous modeling of gene regulatory networks.

Garg A, Di Cara A, Xenarios I, Mendoza L, De Micheli G.

Bioinformatics. 2008 Sep 1;24(17):1917-25. doi: 10.1093/bioinformatics/btn336. Epub 2008 Jul 9.

PMID:
18614585
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks.

Zañudo JG, Albert R.

Chaos. 2013 Jun;23(2):025111. doi: 10.1063/1.4809777.

PMID:
23822509
[PubMed - indexed for MEDLINE]
19.

[Dynamic paradigm in psychopathology: "chaos theory", from physics to psychiatry].

Pezard L, Nandrino JL.

Encephale. 2001 May-Jun;27(3):260-8. French.

PMID:
11488256
[PubMed - indexed for MEDLINE]
20.

Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks.

Jamshidi S, Siebert H, Bockmayr A.

Biosystems. 2013 May;112(2):171-9. doi: 10.1016/j.biosystems.2013.03.001. Epub 2013 Mar 14.

PMID:
23499821
[PubMed - indexed for MEDLINE]

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