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Results: 1 to 20 of 102

1.

Quantification of microRNA expression with next-generation sequencing.

Eminaga S, Christodoulou DC, Vigneault F, Church GM, Seidman JG.

Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.17. doi: 10.1002/0471142727.mb0417s103.

PMID:
23821442
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

High-throughput multiplex sequencing of miRNA.

Vigneault F, Ter-Ovanesyan D, Alon S, Eminaga S, C Christodoulou D, Seidman JG, Eisenberg E, M Church G.

Curr Protoc Hum Genet. 2012 Apr;Chapter 11:Unit 11.12.1-10. doi: 10.1002/0471142905.hg1112s73.

PMID:
22470142
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing.

Farazi TA, Brown M, Morozov P, Ten Hoeve JJ, Ben-Dov IZ, Hovestadt V, Hafner M, Renwick N, Mihailović A, Wessels LF, Tuschl T.

Methods. 2012 Oct;58(2):171-87. doi: 10.1016/j.ymeth.2012.07.020. Epub 2012 Jul 23.

PMID:
22836126
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing.

Hafner M, Renwick N, Farazi TA, Mihailović A, Pena JT, Tuschl T.

Methods. 2012 Oct;58(2):164-70. doi: 10.1016/j.ymeth.2012.07.030. Epub 2012 Aug 7.

PMID:
22885844
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Next-generation sequencing identifies the natural killer cell microRNA transcriptome.

Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER.

Genome Res. 2010 Nov;20(11):1590-604. doi: 10.1101/gr.107995.110. Epub 2010 Oct 8.

PMID:
20935160
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

New methods for next generation sequencing based microRNA expression profiling.

Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA.

BMC Genomics. 2010 Dec 20;11:716. doi: 10.1186/1471-2164-11-716.

PMID:
21171994
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression.

Wang WC, Lin FM, Chang WC, Lin KY, Huang HD, Lin NS.

BMC Bioinformatics. 2009 Oct 12;10:328. doi: 10.1186/1471-2105-10-328.

PMID:
19821977
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High-throughput approaches for microRNA expression analysis.

Dedeoğlu BG.

Methods Mol Biol. 2014;1107:91-103. doi: 10.1007/978-1-62703-748-8_6.

PMID:
24272433
[PubMed - indexed for MEDLINE]
9.

Barcoding bias in high-throughput multiplex sequencing of miRNA.

Alon S, Vigneault F, Eminaga S, Christodoulou DC, Seidman JG, Church GM, Eisenberg E.

Genome Res. 2011 Sep;21(9):1506-11. doi: 10.1101/gr.121715.111. Epub 2011 Jul 12.

PMID:
21750102
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
[PubMed - indexed for MEDLINE]
11.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
[PubMed - indexed for MEDLINE]
12.

Genome-wide identification of microRNAs in Medicago truncatula by high-throughput sequencing.

Wang TZ, Zhang WH.

Methods Mol Biol. 2013;1069:67-80. doi: 10.1007/978-1-62703-613-9_6.

PMID:
23996309
[PubMed - indexed for MEDLINE]
13.

Characterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis.

Ai L, Xu MJ, Chen MX, Zhang YN, Chen SH, Guo J, Cai YC, Zhou XN, Zhu XQ, Chen JX.

Parasitol Res. 2012 Jun;110(6):2373-8. doi: 10.1007/s00436-011-2773-x. Epub 2011 Dec 28.

PMID:
22203522
[PubMed - indexed for MEDLINE]
14.

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.

Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21.

PMID:
23793624
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Characterization of the small RNA transcriptomes of androgen dependent and independent prostate cancer cell line by deep sequencing.

Xu G, Wu J, Zhou L, Chen B, Sun Z, Zhao F, Tao Z.

PLoS One. 2010 Nov 30;5(11):e15519. doi: 10.1371/journal.pone.0015519.

PMID:
21152091
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Generation of plant small RNA cDNA libraries for high-throughput sequencing.

Zhu QH, Helliwell CA.

Methods Mol Biol. 2012;894:123-37. doi: 10.1007/978-1-61779-882-5_9.

PMID:
22678577
[PubMed - indexed for MEDLINE]
17.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

PMID:
23163954
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

miRNA data analysis: next-gen sequencing.

Gunaratne PH, Coarfa C, Soibam B, Tandon A.

Methods Mol Biol. 2012;822:273-88. doi: 10.1007/978-1-61779-427-8_19.

PMID:
22144206
[PubMed - indexed for MEDLINE]
19.

Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing.

Osanto S, Qin Y, Buermans HP, Berkers J, Lerut E, Goeman JJ, van Poppel H.

PLoS One. 2012;7(6):e38298. doi: 10.1371/journal.pone.0038298. Epub 2012 Jun 20.

PMID:
22745662
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.

PMID:
22394504
[PubMed - indexed for MEDLINE]
Free PMC Article

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