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Results: 1 to 20 of 121

1.

Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields.

Pruteanu-Malinici I, Majoros WH, Ohler U.

Bioinformatics. 2013 Jul 1;29(13):i27-35. doi: 10.1093/bioinformatics/btt206.

PMID:
23812993
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Automatic annotation of spatial expression patterns via sparse Bayesian factor models.

Pruteanu-Malinici I, Mace DL, Ohler U.

PLoS Comput Biol. 2011 Jul;7(7):e1002098. doi: 10.1371/journal.pcbi.1002098. Epub 2011 Jul 21.

PMID:
21814502
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Automatic image analysis for gene expression patterns of fly embryos.

Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW.

BMC Cell Biol. 2007 Jul 10;8 Suppl 1:S7.

PMID:
17634097
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images.

Puniyani K, Faloutsos C, Xing EP.

Bioinformatics. 2010 Jun 15;26(12):i47-56. doi: 10.1093/bioinformatics/btq172.

PMID:
20529936
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Joint stage recognition and anatomical annotation of Drosophila gene expression patterns.

Cai X, Wang H, Huang H, Ding C.

Bioinformatics. 2012 Jun 15;28(12):i16-24. doi: 10.1093/bioinformatics/bts220.

PMID:
22689756
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression.

Yuan L, Pan C, Ji S, McCutchan M, Zhou ZH, Newfeld SJ, Kumar S, Ye J.

Bioinformatics. 2014 Jan 15;30(2):266-73. doi: 10.1093/bioinformatics/btt648. Epub 2013 Dec 3.

PMID:
24300439
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GINI: from ISH images to gene interaction networks.

Puniyani K, Xing EP.

PLoS Comput Biol. 2013;9(10):e1003227. doi: 10.1371/journal.pcbi.1003227. Epub 2013 Oct 10.

PMID:
24130465
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Image-level and group-level models for Drosophila gene expression pattern annotation.

Sun Q, Muckatira S, Yuan L, Ji S, Newfeld S, Kumar S, Ye J.

BMC Bioinformatics. 2013 Dec 3;14:350. doi: 10.1186/1471-2105-14-350.

PMID:
24299119
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A bag-of-words approach for Drosophila gene expression pattern annotation.

Ji S, Li YX, Zhou ZH, Kumar S, Ye J.

BMC Bioinformatics. 2009 Apr 21;10:119. doi: 10.1186/1471-2105-10-119.

PMID:
19383139
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Automatically identifying and annotating mouse embryo gene expression patterns.

Han L, van Hemert JI, Baldock RA.

Bioinformatics. 2011 Apr 15;27(8):1101-7. doi: 10.1093/bioinformatics/btr105. Epub 2011 Feb 25.

PMID:
21357576
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data.

Zhao X, Cheung LW.

BMC Bioinformatics. 2007 Feb 28;8:67.

PMID:
17328811
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Automated annotation of Drosophila gene expression patterns using a controlled vocabulary.

Ji S, Sun L, Jin R, Kumar S, Ye J.

Bioinformatics. 2008 Sep 1;24(17):1881-8. doi: 10.1093/bioinformatics/btn347. Epub 2008 Jul 16.

PMID:
18632750
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Automatic recognition and annotation of gene expression patterns of fly embryos.

Zhou J, Peng H.

Bioinformatics. 2007 Mar 1;23(5):589-96. Epub 2007 Jan 19. Erratum in: Bioinformatics. 2007 Jun;23(12):1571-2..

PMID:
17237064
[PubMed - indexed for MEDLINE]
Free Article
14.

Medium-throughput processing of whole mount in situ hybridisation experiments into gene expression domains.

Crombach A, Cicin-Sain D, Wotton KR, Jaeger J.

PLoS One. 2012;7(9):e46658. doi: 10.1371/journal.pone.0046658. Epub 2012 Sep 28.

PMID:
23029561
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phenotype recognition with combined features and random subspace classifier ensemble.

Zhang B, Pham TD.

BMC Bioinformatics. 2011 Apr 30;12:128. doi: 10.1186/1471-2105-12-128.

PMID:
21529372
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis.

Zhang W, Feng D, Li R, Chernikov A, Chrisochoides N, Osgood C, Konikoff C, Newfeld S, Kumar S, Ji S.

BMC Bioinformatics. 2013 Dec 28;14:372. doi: 10.1186/1471-2105-14-372.

PMID:
24373308
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A methodology to infer gene networks from spatial patterns of expression--an application to fluorescence in situ hybridization images.

Campiteli MG, Comin CH, Costa Lda F, Babu MM, Cesar RM.

Mol Biosyst. 2013 Jul;9(7):1926-30. doi: 10.1039/c3mb25475e. Epub 2013 Apr 17.

PMID:
23591446
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Classification of Drosophila embryonic developmental stage range based on gene expression pattern images.

Ye J, Chen J, Li Q, Kumar S.

Comput Syst Bioinformatics Conf. 2006:293-8.

PMID:
17369647
[PubMed - indexed for MEDLINE]
Free Article
19.

Differential and trajectory methods for time course gene expression data.

Liang Y, Tayo B, Cai X, Kelemen A.

Bioinformatics. 2005 Jul 1;21(13):3009-16. Epub 2005 May 10.

PMID:
15886280
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A mixture model with random-effects components for clustering correlated gene-expression profiles.

Ng SK, McLachlan GJ, Wang K, Ben-Tovim Jones L, Ng SW.

Bioinformatics. 2006 Jul 15;22(14):1745-52. Epub 2006 May 3.

PMID:
16675467
[PubMed - indexed for MEDLINE]
Free Article
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