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Results: 1 to 20 of 108

1.

A protein structural class prediction method based on novel features.

Zhang L, Zhao X, Kong L.

Biochimie. 2013 Sep;95(9):1741-4. doi: 10.1016/j.biochi.2013.05.017. Epub 2013 Jun 14.

PMID:
23770446
[PubMed - indexed for MEDLINE]
2.

A novel predictor for protein structural class based on integrated information of the secondary structure sequence.

Zhang L, Zhao X, Kong L, Liu S.

Biochimie. 2014 Aug;103:131-6. doi: 10.1016/j.biochi.2014.05.008. Epub 2014 May 22.

PMID:
24859536
[PubMed - indexed for MEDLINE]
3.

High-accuracy prediction of protein structural class for low-similarity sequences based on predicted secondary structure.

Zhang S, Ding S, Wang T.

Biochimie. 2011 Apr;93(4):710-4. doi: 10.1016/j.biochi.2011.01.001. Epub 2011 Jan 13.

PMID:
21237245
[PubMed - indexed for MEDLINE]
4.

Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition.

Kong L, Zhang L, Lv J.

J Theor Biol. 2014 Mar 7;344:12-8. doi: 10.1016/j.jtbi.2013.11.021. Epub 2013 Dec 6.

PMID:
24316044
[PubMed - indexed for MEDLINE]
5.

Improving the prediction accuracy of protein structural class: approached with alternating word frequency and normalized Lempel-Ziv complexity.

Zhang S, Liang Y, Yuan X.

J Theor Biol. 2014 Jan 21;341:71-7. doi: 10.1016/j.jtbi.2013.10.002. Epub 2013 Oct 17.

PMID:
24140787
[PubMed - indexed for MEDLINE]
6.

A novel protein structural classes prediction method based on predicted secondary structure.

Ding S, Zhang S, Li Y, Wang T.

Biochimie. 2012 May;94(5):1166-71. doi: 10.1016/j.biochi.2012.01.022. Epub 2012 Feb 14.

PMID:
22353242
[PubMed - indexed for MEDLINE]
7.

A high-accuracy protein structural class prediction algorithm using predicted secondary structural information.

Liu T, Jia C.

J Theor Biol. 2010 Dec 7;267(3):272-5. doi: 10.1016/j.jtbi.2010.09.007. Epub 2010 Sep 8.

PMID:
20831876
[PubMed - indexed for MEDLINE]
8.

Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile.

Liu T, Zheng X, Wang J.

Biochimie. 2010 Oct;92(10):1330-4. doi: 10.1016/j.biochi.2010.06.013. Epub 2010 Jun 23.

PMID:
20600567
[PubMed - indexed for MEDLINE]
9.

Novel structure-driven features for accurate prediction of protein structural class.

Kong L, Zhang L.

Genomics. 2014 Apr;103(4):292-7. doi: 10.1016/j.ygeno.2014.04.002. Epub 2014 Apr 18.

PMID:
24747329
[PubMed - in process]
10.

Proposing a highly accurate protein structural class predictor using segmentation-based features.

Dehzangi A, Paliwal K, Lyons J, Sharma A, Sattar A.

BMC Genomics. 2014;15 Suppl 1:S2. doi: 10.1186/1471-2164-15-S1-S2. Epub 2014 Jan 24.

PMID:
24564476
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.

Yang JY, Peng ZL, Chen X.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S9. doi: 10.1186/1471-2105-11-S1-S9.

PMID:
20122246
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences.

Mizianty MJ, Kurgan L.

BMC Bioinformatics. 2009 Dec 13;10:414. doi: 10.1186/1471-2105-10-414.

PMID:
20003388
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Predict protein structural class for low-similarity sequences by evolutionary difference information into the general form of Chou's pseudo amino acid composition.

Zhang L, Zhao X, Kong L.

J Theor Biol. 2014 Aug 21;355:105-10. doi: 10.1016/j.jtbi.2014.04.008. Epub 2014 Apr 13.

PMID:
24735902
[PubMed - indexed for MEDLINE]
14.

SVM-based method for protein structural class prediction using secondary structural content and structural information of amino acids.

Mohammad TA, Nagarajaram HA.

J Bioinform Comput Biol. 2011 Aug;9(4):489-502.

PMID:
21776605
[PubMed - indexed for MEDLINE]
15.

Using principal component analysis and support vector machine to predict protein structural class for low-similarity sequences via PSSM.

Zhang S, Ye F, Yuan X.

J Biomol Struct Dyn. 2012;29(6):634-42. doi: 10.1080/07391102.2011.672627.

PMID:
22545994
[PubMed - indexed for MEDLINE]
16.

Accurate prediction of protein structural class.

Xia XY, Ge M, Wang ZX, Pan XM.

PLoS One. 2012;7(6):e37653. doi: 10.1371/journal.pone.0037653. Epub 2012 Jun 19.

PMID:
22723837
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A protein structural classes prediction method based on PSI-BLAST profile.

Ding S, Yan S, Qi S, Li Y, Yao Y.

J Theor Biol. 2014 Jul 21;353:19-23. doi: 10.1016/j.jtbi.2014.02.034. Epub 2014 Mar 4.

PMID:
24607742
[PubMed - indexed for MEDLINE]
18.

[Protein structural class prediction with binary tree-based support vector machines].

Zhang T, Ding Y.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2008 Aug;25(4):921-4. Chinese.

PMID:
18788309
[PubMed - indexed for MEDLINE]
19.

Prediction of protein structure class by coupling improved genetic algorithm and support vector machine.

Li ZC, Zhou XB, Lin YR, Zou XY.

Amino Acids. 2008 Oct;35(3):581-90. doi: 10.1007/s00726-008-0084-z. Epub 2008 Apr 22.

PMID:
18427714
[PubMed - indexed for MEDLINE]
20.

Incorporating secondary structural features into sequence information for predicting protein structural class.

Liao B, Peng T, Chen H, Lin Y.

Protein Pept Lett. 2013 Oct;20(10):1079-87.

PMID:
23688152
[PubMed - indexed for MEDLINE]
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