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Results: 1 to 20 of 154

1.

bioNerDS: exploring bioinformatics' database and software use through literature mining.

Duck G, Nenadic G, Brass A, Robertson DL, Stevens R.

BMC Bioinformatics. 2013 Jun 15;14:194. doi: 10.1186/1471-2105-14-194.

PMID:
23768135
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

LINNAEUS: a species name identification system for biomedical literature.

Gerner M, Nenadic G, Bergman CM.

BMC Bioinformatics. 2010 Feb 11;11:85. doi: 10.1186/1471-2105-11-85.

PMID:
20149233
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

PMID:
22665627
[PubMed - indexed for MEDLINE]
Free Article
4.

BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature.

de la Calle G, García-Remesal M, Chiesa S, de la Iglesia D, Maojo V.

BMC Bioinformatics. 2009 Oct 7;10:320. doi: 10.1186/1471-2105-10-320.

PMID:
19811635
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.

PMID:
22776079
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Terminological resources for text mining over biomedical scientific literature.

Rinaldi F, Kaljurand K, Sætre R.

Artif Intell Med. 2011 Jun;52(2):107-14. doi: 10.1016/j.artmed.2011.04.011. Epub 2011 Jun 11.

PMID:
21652190
[PubMed - indexed for MEDLINE]
7.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

PMID:
15723693
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.

Tsai RT, Lai PT, Dai HJ, Huang CH, Bow YY, Chang YC, Pan WH, Hsu WL.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S9. doi: 10.1186/1471-2105-10-S15-S9.

PMID:
19958519
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Combining literature text mining with microarray data: advances for system biology modeling.

Faro A, Giordano D, Spampinato C.

Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15. Review.

PMID:
21677032
[PubMed - indexed for MEDLINE]
Free Article
10.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

PMID:
16569235
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
13.

Promoting synergistic research and education in genomics and bioinformatics.

Yang JY, Yang MQ, Zhu MM, Arabnia HR, Deng Y.

BMC Genomics. 2008;9 Suppl 1:I1. doi: 10.1186/1471-2164-9-S1-I1. Review.

PMID:
18366597
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Automated recognition of malignancy mentions in biomedical literature.

Jin Y, McDonald RT, Lerman K, Mandel MA, Carroll S, Liberman MY, Pereira FC, Winters RS, White PS.

BMC Bioinformatics. 2006 Nov 7;7:492.

PMID:
17090325
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.

PMID:
21980353
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs.

Durrant C, Swertz MA, Alberts R, Arends D, Möller S, Mott R, Prins P, van der Velde KJ, Jansen RC, Schughart K.

Brief Bioinform. 2012 Mar;13(2):135-42. doi: 10.1093/bib/bbr026. Epub 2011 Jul 8. Review.

PMID:
22396485
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Bioinformatics.

Moore JH.

J Cell Physiol. 2007 Nov;213(2):365-9. Review.

PMID:
17654500
[PubMed - indexed for MEDLINE]
18.

iTools: a framework for classification, categorization and integration of computational biology resources.

Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW.

PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265.

PMID:
18509477
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

PMID:
15383839
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV.

Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22.

PMID:
20413634
[PubMed - indexed for MEDLINE]
Free PMC Article

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