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Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing.

He H, Liu X.

PLoS One. 2013 Jun 7;8(6):e64356. doi: 10.1371/journal.pone.0064356. Print 2013.


Sequencing and Characterization of Divergent Marbling Levels in the Beef Cattle (Longissimus dorsi Muscle) Transcriptome.

Chen D, Li W, Du M, Wu M, Cao B.

Asian-Australas J Anim Sci. 2015 Feb;28(2):158-65. doi: 10.5713/ajas.14.0394.


Characterization of transcriptional complexity during adipose tissue development in bovines of different ages and sexes.

Zhou Y, Sun J, Li C, Wang Y, Li L, Cai H, Lan X, Lei C, Zhao X, Chen H.

PLoS One. 2014 Jul 1;9(7):e101261. doi: 10.1371/journal.pone.0101261. eCollection 2014. Erratum in: PLoS One. 2014;9(11):e113881.


Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D.

BMC Genomics. 2013 May 7;14:307. doi: 10.1186/1471-2164-14-307.


Global transcriptional profiling of longissimus thoracis muscle tissue in fetal and juvenile domestic goat using RNA sequencing.

Wang YH, Zhang CL, Plath M, Fang XT, Lan XY, Zhou Y, Chen H.

Anim Genet. 2015 Dec;46(6):655-65. doi: 10.1111/age.12338. Epub 2015 Sep 13.


Characterization and comparative analyses of muscle transcriptomes in Dorper and small-tailed Han sheep using RNA-Seq technique.

Zhang C, Wang G, Wang J, Ji Z, Liu Z, Pi X, Chen C.

PLoS One. 2013 Aug 30;8(8):e72686. doi: 10.1371/journal.pone.0072686. eCollection 2013.


Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database.

Blavet N, Charif D, Oger-Desfeux C, Marais GA, Widmer A.

BMC Genomics. 2011 Jul 26;12:376. doi: 10.1186/1471-2164-12-376.


Use of a bovine genome array to identify new biological pathways for beef marbling in Hanwoo (Korean Cattle).

Lee SH, Gondro C, van der Werf J, Kim NK, Lim DJ, Park EW, Oh SJ, Gibson JP, Thompson JM.

BMC Genomics. 2010 Nov 9;11:623. doi: 10.1186/1471-2164-11-623.


A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing.

Chen C, Ai H, Ren J, Li W, Li P, Qiao R, Ouyang J, Yang M, Ma J, Huang L.

BMC Genomics. 2011 Sep 10;12:448. doi: 10.1186/1471-2164-12-448.


Use of a bovine genome chip to identify new biological pathways for beef quality in cattle.

Guifen L, Xiaomu L, Fachun W, Xiuwen T, Haijian C, Enliang S.

Mol Biol Rep. 2012 Dec;39(12):10979-86. doi: 10.1007/s11033-012-1999-8. Epub 2012 Oct 8.


High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.


De novo sequence assembly and characterization of Lycoris aurea transcriptome using GS FLX titanium platform of 454 pyrosequencing.

Wang R, Xu S, Jiang Y, Jiang J, Li X, Liang L, He J, Peng F, Xia B.

PLoS One. 2013 Apr 9;8(4):e60449. doi: 10.1371/journal.pone.0060449. Print 2013.


Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.


Analysis of Litopenaeus vannamei transcriptome using the next-generation DNA sequencing technique.

Li C, Weng S, Chen Y, Yu X, Lü L, Zhang H, He J, Xu X.

PLoS One. 2012;7(10):e47442. doi: 10.1371/journal.pone.0047442. Epub 2012 Oct 11.


Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels.

Choi JW, Liao X, Park S, Jeon HJ, Chung WH, Stothard P, Park YS, Lee JK, Lee KT, Kim SH, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ.

Mol Cells. 2013 Sep;36(3):203-11. doi: 10.1007/s10059-013-2347-0. Epub 2013 Aug 1.


Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing.

Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K.

J Anim Sci. 2013 Jan;91(1):90-103. doi: 10.2527/jas.2012-5371. Epub 2012 Oct 16.


Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.

Guo S, Zheng Y, Joung JG, Liu S, Zhang Z, Crasta OR, Sobral BW, Xu Y, Huang S, Fei Z.

BMC Genomics. 2010 Jun 17;11:384. doi: 10.1186/1471-2164-11-384.


Transcriptome analysis of the silkworm (Bombyx mori) by high-throughput RNA sequencing.

Li Y, Wang G, Tian J, Liu H, Yang H, Yi Y, Wang J, Shi X, Jiang F, Yao B, Zhang Z.

PLoS One. 2012;7(8):e43713. doi: 10.1371/journal.pone.0043713. Epub 2012 Aug 23.


Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers.

Baldwin RL 6th, Li RW, Li CJ, Thomson JM, Bequette BJ.

Physiol Genomics. 2012 May 1;44(10):543-50. doi: 10.1152/physiolgenomics.00144.2011. Epub 2012 Mar 27.

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